Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS01755 and BWI76_RS01760 overlap by 4 nucleotides BWI76_RS01760 and BWI76_RS01765 are separated by 185 nucleotides BWI76_RS01765 and BWI76_RS01770 are separated by 111 nucleotides
BWI76_RS01755: BWI76_RS01755 - 23S rRNA pseudouridine synthase F, at 358,763 to 359,635
_RS01755
BWI76_RS01760: BWI76_RS01760 - hypothetical protein, at 359,632 to 359,904
_RS01760
BWI76_RS01765: BWI76_RS01765 - hypothetical protein, at 360,090 to 361,031
_RS01765
BWI76_RS01770: BWI76_RS01770 - transcriptional regulatory protein RtcR, at 361,143 to 362,723
_RS01770
Position (kb) 360
361
362 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 359.091 kb on + strand, within BWI76_RS01755 at 359.191 kb on + strand, within BWI76_RS01755 at 359.252 kb on - strand, within BWI76_RS01755 at 359.896 kb on - strand at 359.900 kb on + strand at 359.922 kb on + strand at 359.930 kb on - strand at 359.943 kb on - strand at 360.027 kb on - strand at 360.134 kb on + strand at 360.339 kb on - strand, within BWI76_RS01765 at 360.349 kb on + strand, within BWI76_RS01765 at 360.367 kb on + strand, within BWI76_RS01765 at 360.417 kb on - strand, within BWI76_RS01765 at 360.518 kb on + strand, within BWI76_RS01765 at 360.527 kb on - strand, within BWI76_RS01765 at 360.553 kb on + strand, within BWI76_RS01765 at 360.561 kb on - strand, within BWI76_RS01765 at 360.561 kb on - strand, within BWI76_RS01765 at 360.671 kb on - strand, within BWI76_RS01765 at 360.740 kb on + strand, within BWI76_RS01765 at 360.895 kb on + strand, within BWI76_RS01765 at 361.073 kb on - strand at 361.073 kb on - strand at 361.086 kb on + strand at 361.171 kb on - strand at 361.393 kb on + strand, within BWI76_RS01770 at 361.399 kb on - strand, within BWI76_RS01770 at 361.532 kb on + strand, within BWI76_RS01770 at 361.809 kb on - strand, within BWI76_RS01770 at 361.815 kb on + strand, within BWI76_RS01770 at 361.874 kb on - strand, within BWI76_RS01770 at 361.929 kb on - strand, within BWI76_RS01770 at 361.965 kb on - strand, within BWI76_RS01770
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x remove 359,091 + BWI76_RS01755 0.38 +0.1 359,191 + BWI76_RS01755 0.49 +0.4 359,252 - BWI76_RS01755 0.56 +0.4 359,896 - +1.1 359,900 + -1.8 359,922 + +0.2 359,930 - -2.7 359,943 - -1.1 360,027 - +1.1 360,134 + +2.9 360,339 - BWI76_RS01765 0.26 +2.1 360,349 + BWI76_RS01765 0.27 -0.1 360,367 + BWI76_RS01765 0.29 +0.7 360,417 - BWI76_RS01765 0.35 -0.1 360,518 + BWI76_RS01765 0.45 +0.3 360,527 - BWI76_RS01765 0.46 +0.3 360,553 + BWI76_RS01765 0.49 +1.6 360,561 - BWI76_RS01765 0.50 +0.5 360,561 - BWI76_RS01765 0.50 +1.0 360,671 - BWI76_RS01765 0.62 -0.2 360,740 + BWI76_RS01765 0.69 -2.9 360,895 + BWI76_RS01765 0.85 +1.2 361,073 - -1.1 361,073 - +3.1 361,086 + -0.2 361,171 - -0.6 361,393 + BWI76_RS01770 0.16 +1.1 361,399 - BWI76_RS01770 0.16 +0.4 361,532 + BWI76_RS01770 0.25 -0.8 361,809 - BWI76_RS01770 0.42 +1.1 361,815 + BWI76_RS01770 0.43 -0.4 361,874 - BWI76_RS01770 0.46 -0.4 361,929 - BWI76_RS01770 0.50 +0.5 361,965 - BWI76_RS01770 0.52 -0.2
Or see this region's nucleotide sequence