Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS01590 and BWI76_RS01595 are separated by 12 nucleotides BWI76_RS01595 and BWI76_RS01600 are separated by 251 nucleotides BWI76_RS01600 and BWI76_RS01605 overlap by 4 nucleotides
BWI76_RS01590: BWI76_RS01590 - hypothetical protein, at 322,429 to 323,121
_RS01590
BWI76_RS01595: BWI76_RS01595 - zinc resistance protein, at 323,134 to 323,556
_RS01595
BWI76_RS01600: BWI76_RS01600 - sensor protein ZraS, at 323,808 to 325,196
_RS01600
BWI76_RS01605: BWI76_RS01605 - transcriptional regulatory protein ZraR, at 325,193 to 326,524
_RS01605
Position (kb) 323
324
325
326 Strain fitness (log2 ratio) -2
-1
0
1
2 at 322.952 kb on + strand, within BWI76_RS01590 at 322.973 kb on - strand, within BWI76_RS01590 at 323.025 kb on - strand, within BWI76_RS01590 at 323.054 kb on + strand at 323.085 kb on + strand at 323.085 kb on - strand at 323.173 kb on + strand at 323.173 kb on + strand at 323.181 kb on - strand, within BWI76_RS01595 at 323.428 kb on - strand, within BWI76_RS01595 at 323.432 kb on + strand, within BWI76_RS01595 at 323.461 kb on - strand, within BWI76_RS01595 at 323.606 kb on - strand at 323.783 kb on - strand at 323.785 kb on - strand at 323.785 kb on - strand at 323.785 kb on - strand at 323.877 kb on - strand at 323.902 kb on + strand at 324.314 kb on + strand, within BWI76_RS01600 at 324.447 kb on + strand, within BWI76_RS01600 at 324.455 kb on - strand, within BWI76_RS01600 at 324.460 kb on - strand, within BWI76_RS01600 at 324.601 kb on - strand, within BWI76_RS01600 at 324.645 kb on + strand, within BWI76_RS01600 at 324.652 kb on - strand, within BWI76_RS01600 at 324.908 kb on - strand, within BWI76_RS01600 at 324.934 kb on - strand, within BWI76_RS01600 at 324.992 kb on + strand, within BWI76_RS01600 at 325.062 kb on - strand at 325.095 kb on - strand at 325.250 kb on + strand at 325.329 kb on + strand, within BWI76_RS01605 at 325.435 kb on + strand, within BWI76_RS01605 at 325.443 kb on - strand, within BWI76_RS01605 at 325.450 kb on + strand, within BWI76_RS01605 at 325.453 kb on - strand, within BWI76_RS01605 at 325.495 kb on + strand, within BWI76_RS01605 at 325.528 kb on + strand, within BWI76_RS01605 at 325.606 kb on + strand, within BWI76_RS01605 at 325.643 kb on + strand, within BWI76_RS01605 at 325.736 kb on - strand, within BWI76_RS01605 at 325.812 kb on + strand, within BWI76_RS01605 at 325.901 kb on - strand, within BWI76_RS01605 at 325.976 kb on + strand, within BWI76_RS01605 at 326.186 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x remove 322,952 + BWI76_RS01590 0.75 +1.2 322,973 - BWI76_RS01590 0.78 +1.3 323,025 - BWI76_RS01590 0.86 +0.2 323,054 + -1.0 323,085 + -0.9 323,085 - -0.6 323,173 + -2.7 323,173 + -0.2 323,181 - BWI76_RS01595 0.11 +0.6 323,428 - BWI76_RS01595 0.70 +1.8 323,432 + BWI76_RS01595 0.70 +0.8 323,461 - BWI76_RS01595 0.77 -0.2 323,606 - +0.6 323,783 - +0.3 323,785 - -0.9 323,785 - -0.3 323,785 - +1.1 323,877 - -0.6 323,902 + +2.1 324,314 + BWI76_RS01600 0.36 -0.4 324,447 + BWI76_RS01600 0.46 -0.2 324,455 - BWI76_RS01600 0.47 -2.1 324,460 - BWI76_RS01600 0.47 -0.5 324,601 - BWI76_RS01600 0.57 -1.0 324,645 + BWI76_RS01600 0.60 -0.4 324,652 - BWI76_RS01600 0.61 -1.7 324,908 - BWI76_RS01600 0.79 -0.1 324,934 - BWI76_RS01600 0.81 -0.3 324,992 + BWI76_RS01600 0.85 -0.0 325,062 - -0.3 325,095 - +0.8 325,250 + +0.3 325,329 + BWI76_RS01605 0.10 +0.5 325,435 + BWI76_RS01605 0.18 +0.1 325,443 - BWI76_RS01605 0.19 -0.1 325,450 + BWI76_RS01605 0.19 -0.0 325,453 - BWI76_RS01605 0.20 -0.0 325,495 + BWI76_RS01605 0.23 +0.4 325,528 + BWI76_RS01605 0.25 +2.3 325,606 + BWI76_RS01605 0.31 -0.6 325,643 + BWI76_RS01605 0.34 +0.1 325,736 - BWI76_RS01605 0.41 +0.0 325,812 + BWI76_RS01605 0.46 -1.7 325,901 - BWI76_RS01605 0.53 +0.2 325,976 + BWI76_RS01605 0.59 -0.5 326,186 - -0.2
Or see this region's nucleotide sequence