Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS00810 and BWI76_RS00815 are separated by 138 nucleotides BWI76_RS00815 and BWI76_RS00820 are separated by 56 nucleotides BWI76_RS00820 and BWI76_RS00825 are separated by 205 nucleotides
BWI76_RS00810: BWI76_RS00810 - DeoR family transcriptional regulator, at 166,003 to 166,752
_RS00810
BWI76_RS00815: BWI76_RS00815 - glycerol dehydrogenase, at 166,891 to 167,994
_RS00815
BWI76_RS00820: BWI76_RS00820 - fructose-6-phosphate aldolase, at 168,051 to 168,713
_RS00820
BWI76_RS00825: BWI76_RS00825 - AraC family transcriptional regulator, at 168,919 to 169,782
_RS00825
Position (kb) 166
167
168 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 165.914 kb on + strand at 166.001 kb on + strand at 166.009 kb on - strand at 166.009 kb on - strand at 166.068 kb on - strand at 166.095 kb on + strand, within BWI76_RS00810 at 166.204 kb on - strand, within BWI76_RS00810 at 166.254 kb on + strand, within BWI76_RS00810 at 166.262 kb on - strand, within BWI76_RS00810 at 166.293 kb on - strand, within BWI76_RS00810 at 166.346 kb on - strand, within BWI76_RS00810 at 166.447 kb on - strand, within BWI76_RS00810 at 166.704 kb on + strand at 166.704 kb on + strand at 166.826 kb on + strand at 166.827 kb on + strand at 166.954 kb on - strand at 166.954 kb on - strand at 167.100 kb on + strand, within BWI76_RS00815 at 167.207 kb on + strand, within BWI76_RS00815 at 167.221 kb on + strand, within BWI76_RS00815 at 167.285 kb on - strand, within BWI76_RS00815 at 167.510 kb on + strand, within BWI76_RS00815 at 167.640 kb on + strand, within BWI76_RS00815 at 167.735 kb on + strand, within BWI76_RS00815 at 167.743 kb on - strand, within BWI76_RS00815 at 167.896 kb on - strand at 168.079 kb on + strand at 168.079 kb on + strand at 168.096 kb on + strand at 168.189 kb on + strand, within BWI76_RS00820 at 168.297 kb on + strand, within BWI76_RS00820 at 168.305 kb on - strand, within BWI76_RS00820 at 168.384 kb on - strand, within BWI76_RS00820 at 168.395 kb on + strand, within BWI76_RS00820 at 168.481 kb on + strand, within BWI76_RS00820 at 168.590 kb on - strand, within BWI76_RS00820 at 168.742 kb on + strand at 168.848 kb on + strand at 168.978 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x remove 165,914 + +1.8 166,001 + +0.5 166,009 - +1.1 166,009 - -0.1 166,068 - +0.8 166,095 + BWI76_RS00810 0.12 -0.5 166,204 - BWI76_RS00810 0.27 -0.3 166,254 + BWI76_RS00810 0.33 -0.4 166,262 - BWI76_RS00810 0.35 -0.0 166,293 - BWI76_RS00810 0.39 +1.0 166,346 - BWI76_RS00810 0.46 -0.4 166,447 - BWI76_RS00810 0.59 +0.1 166,704 + -1.1 166,704 + -1.2 166,826 + +2.7 166,827 + -0.3 166,954 - +0.3 166,954 - -0.1 167,100 + BWI76_RS00815 0.19 -0.5 167,207 + BWI76_RS00815 0.29 +1.4 167,221 + BWI76_RS00815 0.30 -0.8 167,285 - BWI76_RS00815 0.36 +0.7 167,510 + BWI76_RS00815 0.56 +0.9 167,640 + BWI76_RS00815 0.68 -0.9 167,735 + BWI76_RS00815 0.76 -0.8 167,743 - BWI76_RS00815 0.77 +2.9 167,896 - -0.9 168,079 + +0.1 168,079 + +0.1 168,096 + +0.1 168,189 + BWI76_RS00820 0.21 +1.2 168,297 + BWI76_RS00820 0.37 +0.5 168,305 - BWI76_RS00820 0.38 +0.3 168,384 - BWI76_RS00820 0.50 -1.2 168,395 + BWI76_RS00820 0.52 +0.2 168,481 + BWI76_RS00820 0.65 +2.1 168,590 - BWI76_RS00820 0.81 +0.3 168,742 + -2.5 168,848 + +0.7 168,978 - +0.0
Or see this region's nucleotide sequence