Experiment: Varel_Bryant_medium_Glucose with Oxytetracycline 0.0001953125 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0636 and BT0637 are separated by 114 nucleotides BT0637 and BT0638 overlap by 1 nucleotides BT0638 and BT0639 are separated by 12 nucleotides
BT0636: BT0636 - putative transcriptional regulator (NCBI ptt file), at 783,550 to 785,196
BT0636
BT0637: BT0637 - conserved hypothetical protein (NCBI ptt file), at 785,311 to 786,540
BT0637
BT0638: BT0638 - putative methionine aminopeptidase A (NCBI ptt file), at 786,540 to 787,463
BT0638
BT0639: BT0639 - conserved hypothetical protein (NCBI ptt file), at 787,476 to 788,102
BT0639
Position (kb) 785
786
787 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 784.350 kb on + strand, within BT0636 at 784.435 kb on + strand, within BT0636 at 784.556 kb on - strand, within BT0636 at 784.596 kb on + strand, within BT0636 at 784.611 kb on + strand, within BT0636 at 784.638 kb on + strand, within BT0636 at 784.690 kb on - strand, within BT0636 at 784.725 kb on + strand, within BT0636 at 784.746 kb on + strand, within BT0636 at 784.792 kb on - strand, within BT0636 at 784.795 kb on - strand, within BT0636 at 784.860 kb on + strand, within BT0636 at 784.861 kb on - strand, within BT0636 at 785.004 kb on - strand, within BT0636 at 785.116 kb on - strand at 785.125 kb on + strand at 785.126 kb on - strand at 785.175 kb on + strand at 785.190 kb on + strand at 785.195 kb on - strand at 785.199 kb on - strand at 785.223 kb on - strand at 785.253 kb on + strand at 785.378 kb on - strand at 785.588 kb on - strand, within BT0637 at 785.679 kb on - strand, within BT0637 at 785.679 kb on - strand, within BT0637 at 785.735 kb on - strand, within BT0637 at 785.752 kb on - strand, within BT0637 at 785.837 kb on + strand, within BT0637 at 785.851 kb on + strand, within BT0637 at 785.887 kb on + strand, within BT0637 at 786.323 kb on - strand, within BT0637 at 786.466 kb on - strand at 786.523 kb on - strand at 786.523 kb on - strand at 786.526 kb on + strand at 786.544 kb on + strand at 786.545 kb on - strand at 786.661 kb on + strand, within BT0638 at 786.778 kb on - strand, within BT0638 at 786.957 kb on - strand, within BT0638 at 786.963 kb on - strand, within BT0638 at 787.008 kb on + strand, within BT0638 at 787.008 kb on + strand, within BT0638 at 787.112 kb on - strand, within BT0638 at 787.211 kb on + strand, within BT0638 at 787.214 kb on - strand, within BT0638 at 787.400 kb on + strand at 787.437 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Varel_Bryant_medium_Glucose with Oxytetracycline 0.0001953125 mM remove 784,350 + BT0636 0.49 -0.1 784,435 + BT0636 0.54 -1.8 784,556 - BT0636 0.61 -0.1 784,596 + BT0636 0.64 -0.1 784,611 + BT0636 0.64 +0.9 784,638 + BT0636 0.66 -0.1 784,690 - BT0636 0.69 -0.9 784,725 + BT0636 0.71 +2.3 784,746 + BT0636 0.73 -0.1 784,792 - BT0636 0.75 -0.8 784,795 - BT0636 0.76 -1.4 784,860 + BT0636 0.80 +2.5 784,861 - BT0636 0.80 -2.4 785,004 - BT0636 0.88 -1.6 785,116 - -0.1 785,125 + +0.0 785,126 - -0.4 785,175 + -0.5 785,190 + -0.1 785,195 - -1.1 785,199 - -0.4 785,223 - -0.4 785,253 + +0.9 785,378 - -1.1 785,588 - BT0637 0.23 -2.9 785,679 - BT0637 0.30 -1.1 785,679 - BT0637 0.30 -0.6 785,735 - BT0637 0.34 -3.3 785,752 - BT0637 0.36 -0.6 785,837 + BT0637 0.43 -1.5 785,851 + BT0637 0.44 -1.6 785,887 + BT0637 0.47 +2.3 786,323 - BT0637 0.82 -0.9 786,466 - -1.1 786,523 - +1.8 786,523 - -0.1 786,526 + -1.1 786,544 + +0.9 786,545 - +0.9 786,661 + BT0638 0.13 -2.4 786,778 - BT0638 0.26 -2.1 786,957 - BT0638 0.45 -1.6 786,963 - BT0638 0.46 -2.4 787,008 + BT0638 0.51 -1.6 787,008 + BT0638 0.51 -1.9 787,112 - BT0638 0.62 -1.4 787,211 + BT0638 0.73 -2.1 787,214 - BT0638 0.73 -2.4 787,400 + -2.2 787,437 + -3.6
Or see this region's nucleotide sequence