Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS25900

Experiment: Suberic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS25895 and RR42_RS25900 are separated by 268 nucleotidesRR42_RS25900 and RR42_RS25905 are separated by 9 nucleotides RR42_RS25895: RR42_RS25895 - IclR family transcriptional regulator, at 1,150,687 to 1,151,460 _RS25895 RR42_RS25900: RR42_RS25900 - enoyl-CoA hydratase, at 1,151,729 to 1,152,505 _RS25900 RR42_RS25905: RR42_RS25905 - acetyl-CoA acetyltransferase, at 1,152,515 to 1,153,723 _RS25905 Position (kb) 1151 1152 1153Strain fitness (log2 ratio) -2 -1 0 1 2at 1150.764 kb on - strandat 1150.884 kb on - strand, within RR42_RS25895at 1150.898 kb on + strand, within RR42_RS25895at 1150.898 kb on + strand, within RR42_RS25895at 1151.206 kb on + strand, within RR42_RS25895at 1151.300 kb on + strand, within RR42_RS25895at 1151.301 kb on - strand, within RR42_RS25895at 1151.663 kb on - strandat 1151.668 kb on - strandat 1151.692 kb on + strandat 1151.692 kb on + strandat 1151.693 kb on - strandat 1151.794 kb on - strandat 1151.794 kb on - strandat 1151.875 kb on + strand, within RR42_RS25900at 1151.875 kb on + strand, within RR42_RS25900at 1151.875 kb on + strand, within RR42_RS25900at 1151.875 kb on + strand, within RR42_RS25900at 1151.876 kb on - strand, within RR42_RS25900at 1151.876 kb on - strand, within RR42_RS25900at 1151.981 kb on + strand, within RR42_RS25900at 1151.981 kb on + strand, within RR42_RS25900at 1151.981 kb on + strand, within RR42_RS25900at 1151.981 kb on + strand, within RR42_RS25900at 1152.002 kb on + strand, within RR42_RS25900at 1152.003 kb on - strand, within RR42_RS25900at 1152.209 kb on + strand, within RR42_RS25900at 1152.681 kb on + strand, within RR42_RS25905at 1152.710 kb on + strand, within RR42_RS25905at 1152.894 kb on - strand, within RR42_RS25905at 1153.016 kb on + strand, within RR42_RS25905at 1153.279 kb on + strand, within RR42_RS25905at 1153.280 kb on + strand, within RR42_RS25905at 1153.280 kb on + strand, within RR42_RS25905at 1153.280 kb on + strand, within RR42_RS25905at 1153.343 kb on + strand, within RR42_RS25905at 1153.343 kb on + strand, within RR42_RS25905at 1153.343 kb on + strand, within RR42_RS25905at 1153.343 kb on + strand, within RR42_RS25905at 1153.344 kb on - strand, within RR42_RS25905at 1153.344 kb on - strand, within RR42_RS25905at 1153.423 kb on + strand, within RR42_RS25905at 1153.481 kb on + strand, within RR42_RS25905at 1153.482 kb on - strand, within RR42_RS25905

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Per-strain Table

Position Strand Gene LocusTag Fraction Suberic (C)
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1,150,764 - -0.7
1,150,884 - RR42_RS25895 0.25 +0.8
1,150,898 + RR42_RS25895 0.27 -0.6
1,150,898 + RR42_RS25895 0.27 -1.6
1,151,206 + RR42_RS25895 0.67 -1.5
1,151,300 + RR42_RS25895 0.79 +0.0
1,151,301 - RR42_RS25895 0.79 +2.6
1,151,663 - -1.3
1,151,668 - +0.8
1,151,692 + -0.2
1,151,692 + +2.2
1,151,693 - +0.3
1,151,794 - -1.3
1,151,794 - -1.2
1,151,875 + RR42_RS25900 0.19 +0.1
1,151,875 + RR42_RS25900 0.19 -2.6
1,151,875 + RR42_RS25900 0.19 +0.5
1,151,875 + RR42_RS25900 0.19 -0.2
1,151,876 - RR42_RS25900 0.19 -0.9
1,151,876 - RR42_RS25900 0.19 -0.2
1,151,981 + RR42_RS25900 0.32 -0.8
1,151,981 + RR42_RS25900 0.32 -0.0
1,151,981 + RR42_RS25900 0.32 +1.1
1,151,981 + RR42_RS25900 0.32 -0.8
1,152,002 + RR42_RS25900 0.35 -0.0
1,152,003 - RR42_RS25900 0.35 -1.5
1,152,209 + RR42_RS25900 0.62 -0.9
1,152,681 + RR42_RS25905 0.14 -1.8
1,152,710 + RR42_RS25905 0.16 +0.4
1,152,894 - RR42_RS25905 0.31 -0.3
1,153,016 + RR42_RS25905 0.41 -1.0
1,153,279 + RR42_RS25905 0.63 +1.0
1,153,280 + RR42_RS25905 0.63 +0.1
1,153,280 + RR42_RS25905 0.63 +0.2
1,153,280 + RR42_RS25905 0.63 +0.2
1,153,343 + RR42_RS25905 0.68 -0.3
1,153,343 + RR42_RS25905 0.68 +0.9
1,153,343 + RR42_RS25905 0.68 -1.8
1,153,343 + RR42_RS25905 0.68 +0.2
1,153,344 - RR42_RS25905 0.69 +0.2
1,153,344 - RR42_RS25905 0.69 +0.4
1,153,423 + RR42_RS25905 0.75 -0.7
1,153,481 + RR42_RS25905 0.80 +1.0
1,153,482 - RR42_RS25905 0.80 +0.2

Or see this region's nucleotide sequence