Strain Fitness in Ralstonia solanacearum IBSBF1503 around RALBFv3_RS21600

Experiment: Plant=Tomato cv. Moneymaker; Treatment=None; Sample=xylem local; Collection=Direct; Time=3 dpi

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRALBFv3_RS21590 and RALBFv3_RS21595 are separated by 236 nucleotidesRALBFv3_RS21595 and RALBFv3_RS21600 are separated by 103 nucleotidesRALBFv3_RS21600 and RALBFv3_RS21605 are separated by 5 nucleotides RALBFv3_RS21590: RALBFv3_RS21590 - flagellar basal body M-ring protein FliF, at 1,572,845 to 1,574,680 _RS21590 RALBFv3_RS21595: RALBFv3_RS21595 - flagellar hook-basal body complex protein FliE, at 1,574,917 to 1,575,249 _RS21595 RALBFv3_RS21600: RALBFv3_RS21600 - mannosyltransferase, at 1,575,353 to 1,576,744 _RS21600 RALBFv3_RS21605: RALBFv3_RS21605 - glycosyltransferase family 2 protein, at 1,576,750 to 1,577,838 _RS21605 Position (kb) 1575 1576 1577Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 1574.386 kb on - strand, within RALBFv3_RS21590at 1574.838 kb on - strandat 1574.895 kb on - strandat 1574.907 kb on + strandat 1574.907 kb on + strandat 1574.925 kb on + strandat 1574.926 kb on - strandat 1575.032 kb on - strand, within RALBFv3_RS21595at 1575.447 kb on - strandat 1575.827 kb on + strand, within RALBFv3_RS21600at 1575.827 kb on + strand, within RALBFv3_RS21600at 1575.828 kb on - strand, within RALBFv3_RS21600at 1575.842 kb on + strand, within RALBFv3_RS21600at 1575.843 kb on - strand, within RALBFv3_RS21600at 1575.905 kb on + strand, within RALBFv3_RS21600at 1575.905 kb on + strand, within RALBFv3_RS21600at 1575.905 kb on + strand, within RALBFv3_RS21600at 1575.906 kb on - strand, within RALBFv3_RS21600at 1575.926 kb on + strand, within RALBFv3_RS21600at 1575.927 kb on - strand, within RALBFv3_RS21600at 1575.962 kb on + strand, within RALBFv3_RS21600at 1575.962 kb on + strand, within RALBFv3_RS21600at 1575.962 kb on + strand, within RALBFv3_RS21600at 1575.963 kb on - strand, within RALBFv3_RS21600at 1575.963 kb on - strand, within RALBFv3_RS21600at 1576.167 kb on - strand, within RALBFv3_RS21600at 1576.386 kb on - strand, within RALBFv3_RS21600at 1576.387 kb on + strand, within RALBFv3_RS21600at 1576.387 kb on + strand, within RALBFv3_RS21600at 1576.388 kb on - strand, within RALBFv3_RS21600at 1576.434 kb on - strand, within RALBFv3_RS21600at 1576.631 kb on + strandat 1576.631 kb on + strandat 1576.632 kb on - strandat 1576.632 kb on - strandat 1576.640 kb on + strandat 1576.640 kb on + strandat 1576.640 kb on + strandat 1576.641 kb on - strandat 1576.641 kb on - strandat 1576.668 kb on - strandat 1577.258 kb on + strand, within RALBFv3_RS21605at 1577.260 kb on + strand, within RALBFv3_RS21605at 1577.261 kb on - strand, within RALBFv3_RS21605at 1577.344 kb on + strand, within RALBFv3_RS21605at 1577.344 kb on + strand, within RALBFv3_RS21605at 1577.344 kb on + strand, within RALBFv3_RS21605at 1577.413 kb on + strand, within RALBFv3_RS21605at 1577.413 kb on + strand, within RALBFv3_RS21605at 1577.414 kb on - strand, within RALBFv3_RS21605at 1577.566 kb on + strand, within RALBFv3_RS21605at 1577.566 kb on + strand, within RALBFv3_RS21605

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Tomato cv. Moneymaker; Treatment=None; Sample=xylem local; Collection=Direct; Time=3 dpi
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1,574,386 - RALBFv3_RS21590 0.84 +1.3
1,574,838 - -0.7
1,574,895 - +2.1
1,574,907 + -2.2
1,574,907 + -0.1
1,574,925 + +1.3
1,574,926 - +0.7
1,575,032 - RALBFv3_RS21595 0.35 +0.4
1,575,447 - +0.4
1,575,827 + RALBFv3_RS21600 0.34 +0.2
1,575,827 + RALBFv3_RS21600 0.34 -0.3
1,575,828 - RALBFv3_RS21600 0.34 +1.2
1,575,842 + RALBFv3_RS21600 0.35 -1.1
1,575,843 - RALBFv3_RS21600 0.35 -0.6
1,575,905 + RALBFv3_RS21600 0.40 -0.4
1,575,905 + RALBFv3_RS21600 0.40 -0.4
1,575,905 + RALBFv3_RS21600 0.40 -0.6
1,575,906 - RALBFv3_RS21600 0.40 -1.6
1,575,926 + RALBFv3_RS21600 0.41 +0.6
1,575,927 - RALBFv3_RS21600 0.41 +0.6
1,575,962 + RALBFv3_RS21600 0.44 +0.9
1,575,962 + RALBFv3_RS21600 0.44 +0.4
1,575,962 + RALBFv3_RS21600 0.44 -1.6
1,575,963 - RALBFv3_RS21600 0.44 +0.4
1,575,963 - RALBFv3_RS21600 0.44 -0.8
1,576,167 - RALBFv3_RS21600 0.58 -0.1
1,576,386 - RALBFv3_RS21600 0.74 -0.1
1,576,387 + RALBFv3_RS21600 0.74 +0.9
1,576,387 + RALBFv3_RS21600 0.74 -0.4
1,576,388 - RALBFv3_RS21600 0.74 +0.3
1,576,434 - RALBFv3_RS21600 0.78 -0.2
1,576,631 + +0.9
1,576,631 + -2.2
1,576,632 - -0.9
1,576,632 - +0.5
1,576,640 + -0.1
1,576,640 + -0.4
1,576,640 + -0.0
1,576,641 - -1.4
1,576,641 - +4.6
1,576,668 - +0.6
1,577,258 + RALBFv3_RS21605 0.47 -1.2
1,577,260 + RALBFv3_RS21605 0.47 -0.7
1,577,261 - RALBFv3_RS21605 0.47 -0.8
1,577,344 + RALBFv3_RS21605 0.55 -0.9
1,577,344 + RALBFv3_RS21605 0.55 -0.0
1,577,344 + RALBFv3_RS21605 0.55 +1.5
1,577,413 + RALBFv3_RS21605 0.61 -1.9
1,577,413 + RALBFv3_RS21605 0.61 +1.1
1,577,414 - RALBFv3_RS21605 0.61 -1.5
1,577,566 + RALBFv3_RS21605 0.75 -0.1
1,577,566 + RALBFv3_RS21605 0.75 +0.3

Or see this region's nucleotide sequence