Experiment: Plant=Tomato cv. Moneymaker; Treatment=None; Sample=xylem local; Collection=Direct; Time=3 dpi
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS15840 and RALBFv3_RS15845 overlap by 4 nucleotides RALBFv3_RS15845 and RALBFv3_RS15850 overlap by 4 nucleotides RALBFv3_RS15850 and RALBFv3_RS15855 are separated by 28 nucleotides RALBFv3_RS15855 and RALBFv3_RS15860 are separated by 110 nucleotides
RALBFv3_RS15840: RALBFv3_RS15840 - formyltransferase, at 3,449,253 to 3,450,188
_RS15840
RALBFv3_RS15845: RALBFv3_RS15845 - UDP-4-amino-4-deoxy-L-arabinose-oxoglutarate aminotransferase, at 3,450,185 to 3,451,183
_RS15845
RALBFv3_RS15850: RALBFv3_RS15850 - DegT/DnrJ/EryC1/StrS aminotransferase family protein, at 3,451,180 to 3,452,343
_RS15850
RALBFv3_RS15855: RALBFv3_RS15855 - 4-amino-4-deoxy-L-arabinose transferase, at 3,452,372 to 3,452,743
_RS15855
RALBFv3_RS15860: RALBFv3_RS15860 - UDP phosphate-alpha-4-amino-4-deoxy-L-arabinose arabinosyl transferase, at 3,452,854 to 3,454,524
_RS15860
Position (kb) 3451
3452
3453 Strain fitness (log2 ratio) -1
0
1 at 3452.753 kb on - strand at 3452.753 kb on - strand at 3452.806 kb on - strand at 3452.806 kb on - strand at 3453.099 kb on + strand, within RALBFv3_RS15860
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato cv. Moneymaker; Treatment=None; Sample=xylem local; Collection=Direct; Time=3 dpi remove 3,452,753 - -0.7 3,452,753 - +1.0 3,452,806 - +1.0 3,452,806 - -1.0 3,453,099 + RALBFv3_RS15860 0.15 -0.6
Or see this region's nucleotide sequence