Strain Fitness in Ralstonia solanacearum IBSBF1503 around RALBFv3_RS09580

Experiment: Plant=Tomato cv. Moneymaker; Treatment=None; Sample=xylem local; Collection=Direct; Time=3 dpi

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRALBFv3_RS09570 and RALBFv3_RS09575 are separated by 38 nucleotidesRALBFv3_RS09575 and RALBFv3_RS09580 overlap by 1 nucleotidesRALBFv3_RS09580 and RALBFv3_RS09585 are separated by 175 nucleotidesRALBFv3_RS09585 and RALBFv3_RS09590 are separated by 15 nucleotidesRALBFv3_RS09590 and RALBFv3_RS09595 overlap by 1 nucleotides RALBFv3_RS09570: RALBFv3_RS09570 - nucleoid occlusion factor SlmA, at 2,132,930 to 2,133,586 _RS09570 RALBFv3_RS09575: RALBFv3_RS09575 - pyrimidine 5'-nucleotidase, at 2,133,625 to 2,134,485 _RS09575 RALBFv3_RS09580: RALBFv3_RS09580 - acetylglutamate kinase, at 2,134,485 to 2,135,417 _RS09580 RALBFv3_RS09585: RALBFv3_RS09585 - RNA polymerase sigma factor, at 2,135,593 to 2,136,186 _RS09585 RALBFv3_RS09590: RALBFv3_RS09590 - hypothetical protein, at 2,136,202 to 2,136,417 _RS09590 RALBFv3_RS09595: RALBFv3_RS09595 - hypothetical protein, at 2,136,417 to 2,136,659 _RS09595 Position (kb) 2134 2135 2136Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2133.591 kb on + strandat 2133.592 kb on - strandat 2133.626 kb on + strandat 2133.626 kb on + strandat 2133.626 kb on + strandat 2133.658 kb on + strandat 2133.659 kb on - strandat 2133.659 kb on - strandat 2133.659 kb on - strandat 2133.692 kb on + strandat 2133.692 kb on + strandat 2133.693 kb on - strandat 2133.693 kb on - strandat 2133.790 kb on - strand, within RALBFv3_RS09575at 2133.833 kb on + strand, within RALBFv3_RS09575at 2133.834 kb on - strand, within RALBFv3_RS09575at 2134.051 kb on + strand, within RALBFv3_RS09575at 2134.052 kb on - strand, within RALBFv3_RS09575at 2134.256 kb on + strand, within RALBFv3_RS09575at 2134.313 kb on + strand, within RALBFv3_RS09575at 2134.313 kb on + strand, within RALBFv3_RS09575at 2134.313 kb on + strand, within RALBFv3_RS09575at 2134.313 kb on + strand, within RALBFv3_RS09575at 2134.314 kb on - strand, within RALBFv3_RS09575at 2134.314 kb on - strand, within RALBFv3_RS09575at 2134.314 kb on - strand, within RALBFv3_RS09575at 2134.426 kb on + strandat 2135.445 kb on - strandat 2135.511 kb on + strandat 2135.758 kb on + strand, within RALBFv3_RS09585at 2135.758 kb on + strand, within RALBFv3_RS09585at 2135.758 kb on + strand, within RALBFv3_RS09585at 2135.758 kb on + strand, within RALBFv3_RS09585at 2135.759 kb on - strand, within RALBFv3_RS09585at 2135.759 kb on - strand, within RALBFv3_RS09585at 2135.915 kb on - strand, within RALBFv3_RS09585at 2135.915 kb on - strand, within RALBFv3_RS09585at 2136.115 kb on + strand, within RALBFv3_RS09585at 2136.116 kb on - strand, within RALBFv3_RS09585at 2136.116 kb on - strand, within RALBFv3_RS09585at 2136.331 kb on - strand, within RALBFv3_RS09590

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Tomato cv. Moneymaker; Treatment=None; Sample=xylem local; Collection=Direct; Time=3 dpi
remove
2,133,591 + -1.7
2,133,592 - -0.2
2,133,626 + +1.5
2,133,626 + +2.6
2,133,626 + +1.3
2,133,658 + +0.1
2,133,659 - -1.0
2,133,659 - +0.6
2,133,659 - -1.7
2,133,692 + -0.5
2,133,692 + -0.6
2,133,693 - +1.3
2,133,693 - +0.4
2,133,790 - RALBFv3_RS09575 0.19 -3.0
2,133,833 + RALBFv3_RS09575 0.24 +0.7
2,133,834 - RALBFv3_RS09575 0.24 -0.3
2,134,051 + RALBFv3_RS09575 0.49 -3.1
2,134,052 - RALBFv3_RS09575 0.50 +0.3
2,134,256 + RALBFv3_RS09575 0.73 +0.8
2,134,313 + RALBFv3_RS09575 0.80 -1.4
2,134,313 + RALBFv3_RS09575 0.80 -1.2
2,134,313 + RALBFv3_RS09575 0.80 +1.3
2,134,313 + RALBFv3_RS09575 0.80 -1.3
2,134,314 - RALBFv3_RS09575 0.80 -0.5
2,134,314 - RALBFv3_RS09575 0.80 -0.2
2,134,314 - RALBFv3_RS09575 0.80 -0.2
2,134,426 + -0.2
2,135,445 - -1.0
2,135,511 + -1.5
2,135,758 + RALBFv3_RS09585 0.28 -0.2
2,135,758 + RALBFv3_RS09585 0.28 -0.2
2,135,758 + RALBFv3_RS09585 0.28 +0.3
2,135,758 + RALBFv3_RS09585 0.28 -1.2
2,135,759 - RALBFv3_RS09585 0.28 -0.6
2,135,759 - RALBFv3_RS09585 0.28 -0.7
2,135,915 - RALBFv3_RS09585 0.54 +1.3
2,135,915 - RALBFv3_RS09585 0.54 +0.3
2,136,115 + RALBFv3_RS09585 0.88 -0.1
2,136,116 - RALBFv3_RS09585 0.88 -0.4
2,136,116 - RALBFv3_RS09585 0.88 +0.3
2,136,331 - RALBFv3_RS09590 0.60 +0.0

Or see this region's nucleotide sequence