Experiment: Plant=Tomato cv. Moneymaker; Treatment=None; Sample=xylem local; Collection=Direct; Time=3 dpi
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS05110 and RALBFv3_RS05115 overlap by 7 nucleotides RALBFv3_RS05115 and RALBFv3_RS05120 are separated by 16 nucleotides RALBFv3_RS05120 and RALBFv3_RS05125 are separated by 39 nucleotides
RALBFv3_RS05110: RALBFv3_RS05110 - N-acetylmuramoyl-L-alanine amidase, at 1,135,653 to 1,137,179
_RS05110
RALBFv3_RS05115: RALBFv3_RS05115 - tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE, at 1,137,173 to 1,137,742
_RS05115
RALBFv3_RS05120: RALBFv3_RS05120 - tRNA epoxyqueuosine(34) reductase QueG, at 1,137,759 to 1,138,919
_RS05120
RALBFv3_RS05125: RALBFv3_RS05125 - hypothetical protein, at 1,138,959 to 1,140,719
_RS05125
Position (kb) 1137
1138
1139 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 1136.995 kb on + strand, within RALBFv3_RS05110 at 1137.755 kb on - strand at 1137.970 kb on - strand, within RALBFv3_RS05120 at 1137.970 kb on - strand, within RALBFv3_RS05120 at 1137.970 kb on - strand, within RALBFv3_RS05120 at 1137.971 kb on + strand, within RALBFv3_RS05120 at 1137.971 kb on + strand, within RALBFv3_RS05120 at 1137.972 kb on - strand, within RALBFv3_RS05120 at 1137.972 kb on - strand, within RALBFv3_RS05120 at 1138.053 kb on + strand, within RALBFv3_RS05120 at 1138.053 kb on + strand, within RALBFv3_RS05120 at 1138.053 kb on + strand, within RALBFv3_RS05120 at 1138.053 kb on + strand, within RALBFv3_RS05120 at 1138.054 kb on - strand, within RALBFv3_RS05120 at 1138.054 kb on - strand, within RALBFv3_RS05120 at 1138.054 kb on - strand, within RALBFv3_RS05120 at 1138.054 kb on - strand, within RALBFv3_RS05120 at 1138.054 kb on - strand, within RALBFv3_RS05120 at 1138.170 kb on + strand, within RALBFv3_RS05120 at 1138.242 kb on + strand, within RALBFv3_RS05120 at 1138.243 kb on - strand, within RALBFv3_RS05120 at 1138.476 kb on + strand, within RALBFv3_RS05120 at 1138.476 kb on + strand, within RALBFv3_RS05120 at 1138.524 kb on - strand, within RALBFv3_RS05120 at 1138.573 kb on - strand, within RALBFv3_RS05120 at 1138.573 kb on - strand, within RALBFv3_RS05120 at 1138.917 kb on + strand at 1138.918 kb on - strand at 1138.918 kb on - strand at 1138.918 kb on - strand at 1138.960 kb on + strand at 1138.961 kb on - strand at 1138.961 kb on - strand at 1138.991 kb on + strand at 1138.992 kb on - strand at 1139.040 kb on + strand at 1139.040 kb on + strand at 1139.040 kb on + strand at 1139.041 kb on + strand at 1139.108 kb on - strand at 1139.158 kb on + strand, within RALBFv3_RS05125 at 1139.159 kb on - strand, within RALBFv3_RS05125 at 1139.566 kb on + strand, within RALBFv3_RS05125 at 1139.648 kb on - strand, within RALBFv3_RS05125 at 1139.648 kb on - strand, within RALBFv3_RS05125 at 1139.817 kb on + strand, within RALBFv3_RS05125 at 1139.894 kb on + strand, within RALBFv3_RS05125
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato cv. Moneymaker; Treatment=None; Sample=xylem local; Collection=Direct; Time=3 dpi remove 1,136,995 + RALBFv3_RS05110 0.88 +0.8 1,137,755 - +1.5 1,137,970 - RALBFv3_RS05120 0.18 +0.8 1,137,970 - RALBFv3_RS05120 0.18 -1.2 1,137,970 - RALBFv3_RS05120 0.18 +1.1 1,137,971 + RALBFv3_RS05120 0.18 -3.4 1,137,971 + RALBFv3_RS05120 0.18 +1.1 1,137,972 - RALBFv3_RS05120 0.18 -0.9 1,137,972 - RALBFv3_RS05120 0.18 +1.1 1,138,053 + RALBFv3_RS05120 0.25 -1.2 1,138,053 + RALBFv3_RS05120 0.25 -1.3 1,138,053 + RALBFv3_RS05120 0.25 +1.3 1,138,053 + RALBFv3_RS05120 0.25 -0.8 1,138,054 - RALBFv3_RS05120 0.25 +0.7 1,138,054 - RALBFv3_RS05120 0.25 +0.6 1,138,054 - RALBFv3_RS05120 0.25 -2.4 1,138,054 - RALBFv3_RS05120 0.25 -0.7 1,138,054 - RALBFv3_RS05120 0.25 +1.1 1,138,170 + RALBFv3_RS05120 0.35 -0.1 1,138,242 + RALBFv3_RS05120 0.42 +0.1 1,138,243 - RALBFv3_RS05120 0.42 -2.1 1,138,476 + RALBFv3_RS05120 0.62 -1.5 1,138,476 + RALBFv3_RS05120 0.62 +1.1 1,138,524 - RALBFv3_RS05120 0.66 -0.2 1,138,573 - RALBFv3_RS05120 0.70 -1.4 1,138,573 - RALBFv3_RS05120 0.70 +0.1 1,138,917 + +0.9 1,138,918 - -1.7 1,138,918 - +1.3 1,138,918 - +1.1 1,138,960 + -0.5 1,138,961 - -2.3 1,138,961 - -0.8 1,138,991 + -0.9 1,138,992 - -0.5 1,139,040 + +1.1 1,139,040 + -0.6 1,139,040 + -0.2 1,139,041 + -0.5 1,139,108 - -0.3 1,139,158 + RALBFv3_RS05125 0.11 -1.8 1,139,159 - RALBFv3_RS05125 0.11 -1.0 1,139,566 + RALBFv3_RS05125 0.34 -0.5 1,139,648 - RALBFv3_RS05125 0.39 +0.5 1,139,648 - RALBFv3_RS05125 0.39 -0.4 1,139,817 + RALBFv3_RS05125 0.49 -0.4 1,139,894 + RALBFv3_RS05125 0.53 -1.6
Or see this region's nucleotide sequence