Strain Fitness in Ralstonia solanacearum IBSBF1503 around RALBFv3_RS01610

Experiment: Plant=Tomato cv. Moneymaker; Treatment=None; Sample=xylem local; Collection=Direct; Time=3 dpi

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRALBFv3_RS01605 and RALBFv3_RS01610 are separated by 39 nucleotidesRALBFv3_RS01610 and RALBFv3_RS01615 are separated by 237 nucleotides RALBFv3_RS01605: RALBFv3_RS01605 - iron-sulfur cluster-binding protein, at 359,323 to 360,732 _RS01605 RALBFv3_RS01610: RALBFv3_RS01610 - (Fe-S)-binding protein, at 360,772 to 361,497 _RS01610 RALBFv3_RS01615: RALBFv3_RS01615 - IclR family transcriptional regulator, at 361,735 to 362,532 _RS01615 Position (kb) 360 361 362Strain fitness (log2 ratio) -2 -1 0 1at 359.870 kb on + strand, within RALBFv3_RS01605at 359.871 kb on - strand, within RALBFv3_RS01605at 359.871 kb on - strand, within RALBFv3_RS01605at 360.320 kb on + strand, within RALBFv3_RS01605at 361.018 kb on - strand, within RALBFv3_RS01610at 361.098 kb on - strand, within RALBFv3_RS01610at 361.286 kb on + strand, within RALBFv3_RS01610at 361.286 kb on + strand, within RALBFv3_RS01610at 361.359 kb on - strand, within RALBFv3_RS01610at 361.510 kb on - strandat 361.532 kb on + strandat 361.942 kb on + strand, within RALBFv3_RS01615at 362.378 kb on - strand, within RALBFv3_RS01615

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Tomato cv. Moneymaker; Treatment=None; Sample=xylem local; Collection=Direct; Time=3 dpi
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359,870 + RALBFv3_RS01605 0.39 +0.2
359,871 - RALBFv3_RS01605 0.39 +0.1
359,871 - RALBFv3_RS01605 0.39 -0.0
360,320 + RALBFv3_RS01605 0.71 +0.1
361,018 - RALBFv3_RS01610 0.34 +1.0
361,098 - RALBFv3_RS01610 0.45 +1.1
361,286 + RALBFv3_RS01610 0.71 -0.5
361,286 + RALBFv3_RS01610 0.71 -1.9
361,359 - RALBFv3_RS01610 0.81 +0.4
361,510 - +1.0
361,532 + +0.2
361,942 + RALBFv3_RS01615 0.26 -0.8
362,378 - RALBFv3_RS01615 0.81 -2.3

Or see this region's nucleotide sequence