Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS12085

Experiment: diet=StandardDiet; sample=FecalPellet; mouse5; day6

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBBR_RS12080 and BBR_RS12085 are separated by 45 nucleotidesBBR_RS12085 and BBR_RS12090 are separated by 264 nucleotides BBR_RS12080: BBR_RS12080 - NAD(P)-dependent glycerol-3-phosphate dehydrogenase, at 458,411 to 459,412 _RS12080 BBR_RS12085: BBR_RS12085 - D-alanine--D-alanine ligase A, at 459,458 to 460,645 _RS12085 BBR_RS12090: BBR_RS12090 - Solute-binding protein of ABC transporter system, at 460,910 to 462,076 _RS12090 Position (kb) 459 460 461Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 459.444 kb on + strandat 460.624 kb on + strandat 460.624 kb on + strandat 460.624 kb on + strandat 460.668 kb on - strandat 460.710 kb on + strandat 460.718 kb on - strandat 460.731 kb on + strandat 460.734 kb on + strandat 460.770 kb on + strandat 460.771 kb on - strandat 460.789 kb on + strandat 460.790 kb on + strandat 460.790 kb on + strandat 460.790 kb on + strandat 460.798 kb on - strandat 460.800 kb on + strandat 460.800 kb on + strandat 460.808 kb on - strandat 460.808 kb on - strandat 460.808 kb on - strandat 460.838 kb on - strandat 460.861 kb on + strandat 460.865 kb on + strandat 460.867 kb on + strandat 460.925 kb on - strandat 460.941 kb on + strandat 460.963 kb on + strandat 460.963 kb on + strandat 460.971 kb on - strandat 460.971 kb on - strandat 460.971 kb on - strandat 460.989 kb on - strandat 460.989 kb on - strandat 461.016 kb on + strandat 461.034 kb on - strand, within BBR_RS12090at 461.050 kb on + strand, within BBR_RS12090at 461.050 kb on + strand, within BBR_RS12090at 461.082 kb on - strand, within BBR_RS12090at 461.110 kb on + strand, within BBR_RS12090at 461.110 kb on + strand, within BBR_RS12090at 461.110 kb on + strand, within BBR_RS12090at 461.110 kb on + strand, within BBR_RS12090at 461.185 kb on - strand, within BBR_RS12090at 461.191 kb on - strand, within BBR_RS12090at 461.195 kb on + strand, within BBR_RS12090at 461.215 kb on + strand, within BBR_RS12090at 461.215 kb on + strand, within BBR_RS12090at 461.235 kb on + strand, within BBR_RS12090at 461.241 kb on - strand, within BBR_RS12090at 461.248 kb on - strand, within BBR_RS12090at 461.266 kb on + strand, within BBR_RS12090at 461.291 kb on - strand, within BBR_RS12090at 461.291 kb on - strand, within BBR_RS12090at 461.311 kb on - strand, within BBR_RS12090at 461.339 kb on + strand, within BBR_RS12090at 461.339 kb on + strand, within BBR_RS12090at 461.342 kb on + strand, within BBR_RS12090at 461.342 kb on - strand, within BBR_RS12090at 461.344 kb on + strand, within BBR_RS12090at 461.351 kb on + strand, within BBR_RS12090at 461.359 kb on - strand, within BBR_RS12090at 461.359 kb on - strand, within BBR_RS12090at 461.359 kb on - strand, within BBR_RS12090at 461.377 kb on - strand, within BBR_RS12090at 461.379 kb on + strand, within BBR_RS12090at 461.387 kb on - strand, within BBR_RS12090at 461.411 kb on + strand, within BBR_RS12090at 461.452 kb on + strand, within BBR_RS12090at 461.452 kb on - strand, within BBR_RS12090at 461.517 kb on - strand, within BBR_RS12090at 461.517 kb on - strand, within BBR_RS12090at 461.558 kb on + strand, within BBR_RS12090at 461.587 kb on - strand, within BBR_RS12090at 461.597 kb on - strand, within BBR_RS12090at 461.602 kb on + strand, within BBR_RS12090at 461.604 kb on - strand, within BBR_RS12090at 461.606 kb on + strand, within BBR_RS12090at 461.644 kb on + strand, within BBR_RS12090

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Per-strain Table

Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; mouse5; day6
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459,444 + +0.0
460,624 + +1.0
460,624 + +0.3
460,624 + -0.7
460,668 - -1.4
460,710 + +1.2
460,718 - -1.1
460,731 + +1.2
460,734 + +2.1
460,770 + +0.7
460,771 - -1.7
460,789 + -1.0
460,790 + +2.8
460,790 + +1.7
460,790 + -0.4
460,798 - -0.6
460,800 + +0.9
460,800 + -1.8
460,808 - +0.0
460,808 - -2.0
460,808 - +2.1
460,838 - +1.9
460,861 + +2.0
460,865 + -1.0
460,867 + +1.1
460,925 - -1.7
460,941 + -0.6
460,963 + +0.4
460,963 + +0.7
460,971 - +4.2
460,971 - +2.3
460,971 - -1.8
460,989 - -0.5
460,989 - +3.2
461,016 + +0.4
461,034 - BBR_RS12090 0.11 -0.7
461,050 + BBR_RS12090 0.12 -2.1
461,050 + BBR_RS12090 0.12 +0.9
461,082 - BBR_RS12090 0.15 -1.4
461,110 + BBR_RS12090 0.17 -0.7
461,110 + BBR_RS12090 0.17 -1.3
461,110 + BBR_RS12090 0.17 +1.1
461,110 + BBR_RS12090 0.17 +2.1
461,185 - BBR_RS12090 0.24 -0.6
461,191 - BBR_RS12090 0.24 -1.3
461,195 + BBR_RS12090 0.24 -1.3
461,215 + BBR_RS12090 0.26 +1.4
461,215 + BBR_RS12090 0.26 -0.1
461,235 + BBR_RS12090 0.28 -1.0
461,241 - BBR_RS12090 0.28 -1.9
461,248 - BBR_RS12090 0.29 -1.1
461,266 + BBR_RS12090 0.31 -1.4
461,291 - BBR_RS12090 0.33 +1.4
461,291 - BBR_RS12090 0.33 -0.7
461,311 - BBR_RS12090 0.34 -0.9
461,339 + BBR_RS12090 0.37 -0.9
461,339 + BBR_RS12090 0.37 -1.1
461,342 + BBR_RS12090 0.37 +1.9
461,342 - BBR_RS12090 0.37 +2.3
461,344 + BBR_RS12090 0.37 -1.9
461,351 + BBR_RS12090 0.38 +3.6
461,359 - BBR_RS12090 0.38 +0.6
461,359 - BBR_RS12090 0.38 -0.7
461,359 - BBR_RS12090 0.38 -0.1
461,377 - BBR_RS12090 0.40 -1.9
461,379 + BBR_RS12090 0.40 -1.7
461,387 - BBR_RS12090 0.41 +2.5
461,411 + BBR_RS12090 0.43 -1.1
461,452 + BBR_RS12090 0.46 +0.7
461,452 - BBR_RS12090 0.46 +3.2
461,517 - BBR_RS12090 0.52 +1.8
461,517 - BBR_RS12090 0.52 -0.7
461,558 + BBR_RS12090 0.56 +2.2
461,587 - BBR_RS12090 0.58 -0.3
461,597 - BBR_RS12090 0.59 -1.4
461,602 + BBR_RS12090 0.59 -0.6
461,604 - BBR_RS12090 0.59 +1.0
461,606 + BBR_RS12090 0.60 -2.4
461,644 + BBR_RS12090 0.63 +0.2

Or see this region's nucleotide sequence