Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS26900

Experiment: Pimelic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS26895 and RR42_RS26900 are separated by 82 nucleotidesRR42_RS26900 and RR42_RS26905 are separated by 50 nucleotides RR42_RS26895: RR42_RS26895 - 3-methylcrotonyl-CoA carboxylase, at 1,387,783 to 1,389,807 _RS26895 RR42_RS26900: RR42_RS26900 - enoyl-CoA hydratase, at 1,389,890 to 1,390,678 _RS26900 RR42_RS26905: RR42_RS26905 - methylcrotonoyl-CoA carboxylase, at 1,390,729 to 1,392,336 _RS26905 Position (kb) 1389 1390 1391Strain fitness (log2 ratio) -3 -2 -1 0 1at 1389.006 kb on - strand, within RR42_RS26895at 1390.347 kb on + strand, within RR42_RS26900at 1390.347 kb on + strand, within RR42_RS26900at 1391.468 kb on + strand, within RR42_RS26905

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Per-strain Table

Position Strand Gene LocusTag Fraction Pimelic (C)
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1,389,006 - RR42_RS26895 0.60 +0.9
1,390,347 + RR42_RS26900 0.58 -2.8
1,390,347 + RR42_RS26900 0.58 -0.7
1,391,468 + RR42_RS26905 0.46 +0.9

Or see this region's nucleotide sequence