Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS26225

Experiment: Pimelic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS26220 and RR42_RS26225 overlap by 4 nucleotidesRR42_RS26225 and RR42_RS26230 are separated by 69 nucleotides RR42_RS26220: RR42_RS26220 - citrate lyase subunit beta, at 1,240,008 to 1,240,925 _RS26220 RR42_RS26225: RR42_RS26225 - dimethylmenaquinone methyltransferase, at 1,240,922 to 1,241,578 _RS26225 RR42_RS26230: RR42_RS26230 - MFS transporter, at 1,241,648 to 1,242,919 _RS26230 Position (kb) 1240 1241 1242Strain fitness (log2 ratio) -2 -1 0 1at 1239.952 kb on + strandat 1239.952 kb on + strandat 1240.096 kb on + strandat 1240.301 kb on + strand, within RR42_RS26220at 1240.312 kb on + strand, within RR42_RS26220at 1241.703 kb on + strandat 1241.703 kb on + strandat 1241.704 kb on - strandat 1241.796 kb on + strand, within RR42_RS26230at 1241.796 kb on + strand, within RR42_RS26230at 1241.796 kb on + strand, within RR42_RS26230at 1241.797 kb on - strand, within RR42_RS26230at 1241.797 kb on - strand, within RR42_RS26230at 1241.868 kb on + strand, within RR42_RS26230at 1241.868 kb on + strand, within RR42_RS26230at 1241.869 kb on - strand, within RR42_RS26230at 1241.901 kb on + strand, within RR42_RS26230at 1241.901 kb on + strand, within RR42_RS26230at 1241.902 kb on - strand, within RR42_RS26230at 1242.120 kb on + strand, within RR42_RS26230at 1242.300 kb on + strand, within RR42_RS26230at 1242.300 kb on + strand, within RR42_RS26230at 1242.300 kb on + strand, within RR42_RS26230at 1242.300 kb on + strand, within RR42_RS26230at 1242.300 kb on + strand, within RR42_RS26230at 1242.300 kb on + strand, within RR42_RS26230at 1242.300 kb on + strand, within RR42_RS26230at 1242.301 kb on - strand, within RR42_RS26230at 1242.301 kb on - strand, within RR42_RS26230at 1242.301 kb on - strand, within RR42_RS26230at 1242.301 kb on - strand, within RR42_RS26230at 1242.456 kb on + strand, within RR42_RS26230at 1242.457 kb on - strand, within RR42_RS26230at 1242.539 kb on + strand, within RR42_RS26230at 1242.539 kb on + strand, within RR42_RS26230at 1242.540 kb on - strand, within RR42_RS26230at 1242.577 kb on + strand, within RR42_RS26230

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Per-strain Table

Position Strand Gene LocusTag Fraction Pimelic (C)
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1,239,952 + +0.5
1,239,952 + +0.2
1,240,096 + -0.1
1,240,301 + RR42_RS26220 0.32 +0.1
1,240,312 + RR42_RS26220 0.33 -0.5
1,241,703 + -0.1
1,241,703 + +0.5
1,241,704 - -0.1
1,241,796 + RR42_RS26230 0.12 -0.8
1,241,796 + RR42_RS26230 0.12 -1.9
1,241,796 + RR42_RS26230 0.12 +0.7
1,241,797 - RR42_RS26230 0.12 -0.0
1,241,797 - RR42_RS26230 0.12 -0.1
1,241,868 + RR42_RS26230 0.17 +0.8
1,241,868 + RR42_RS26230 0.17 -0.6
1,241,869 - RR42_RS26230 0.17 +0.4
1,241,901 + RR42_RS26230 0.20 -0.4
1,241,901 + RR42_RS26230 0.20 -0.1
1,241,902 - RR42_RS26230 0.20 -0.3
1,242,120 + RR42_RS26230 0.37 -0.0
1,242,300 + RR42_RS26230 0.51 +0.3
1,242,300 + RR42_RS26230 0.51 -0.8
1,242,300 + RR42_RS26230 0.51 +0.3
1,242,300 + RR42_RS26230 0.51 -0.2
1,242,300 + RR42_RS26230 0.51 +0.0
1,242,300 + RR42_RS26230 0.51 -0.2
1,242,300 + RR42_RS26230 0.51 -0.4
1,242,301 - RR42_RS26230 0.51 +0.1
1,242,301 - RR42_RS26230 0.51 -0.6
1,242,301 - RR42_RS26230 0.51 +0.5
1,242,301 - RR42_RS26230 0.51 +0.2
1,242,456 + RR42_RS26230 0.64 +1.0
1,242,457 - RR42_RS26230 0.64 +0.3
1,242,539 + RR42_RS26230 0.70 -0.9
1,242,539 + RR42_RS26230 0.70 +0.1
1,242,540 - RR42_RS26230 0.70 +0.5
1,242,577 + RR42_RS26230 0.73 +0.3

Or see this region's nucleotide sequence