Experiment: Pimelic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS25580 and RR42_RS25585 are separated by 237 nucleotides RR42_RS25585 and RR42_RS25590 are separated by 499 nucleotides
RR42_RS25580: RR42_RS25580 - haloacid dehalogenase, at 1,083,281 to 1,083,991
_RS25580
RR42_RS25585: RR42_RS25585 - membrane protein, at 1,084,229 to 1,085,392
_RS25585
RR42_RS25590: RR42_RS25590 - glucose 1-dehydrogenase, at 1,085,892 to 1,086,635
_RS25590
Position (kb)
1084
1085
1086 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1083.328 kb on - strand at 1083.350 kb on + strand at 1083.350 kb on + strand at 1083.351 kb on - strand at 1083.431 kb on + strand, within RR42_RS25580 at 1083.432 kb on - strand, within RR42_RS25580 at 1083.432 kb on - strand, within RR42_RS25580 at 1083.668 kb on - strand, within RR42_RS25580 at 1083.705 kb on + strand, within RR42_RS25580 at 1083.746 kb on + strand, within RR42_RS25580 at 1083.746 kb on + strand, within RR42_RS25580 at 1083.747 kb on - strand, within RR42_RS25580 at 1083.875 kb on + strand, within RR42_RS25580 at 1083.875 kb on + strand, within RR42_RS25580 at 1083.876 kb on - strand, within RR42_RS25580 at 1083.876 kb on - strand, within RR42_RS25580 at 1084.116 kb on + strand at 1084.116 kb on + strand at 1084.117 kb on - strand at 1084.131 kb on + strand at 1084.199 kb on + strand at 1084.307 kb on + strand at 1084.308 kb on - strand at 1084.335 kb on - strand at 1084.453 kb on + strand, within RR42_RS25585 at 1084.453 kb on + strand, within RR42_RS25585 at 1084.728 kb on - strand, within RR42_RS25585 at 1084.750 kb on + strand, within RR42_RS25585 at 1084.887 kb on - strand, within RR42_RS25585 at 1084.920 kb on - strand, within RR42_RS25585 at 1084.920 kb on - strand, within RR42_RS25585 at 1084.989 kb on - strand, within RR42_RS25585 at 1084.989 kb on - strand, within RR42_RS25585 at 1084.995 kb on - strand, within RR42_RS25585 at 1085.075 kb on + strand, within RR42_RS25585 at 1085.076 kb on - strand, within RR42_RS25585 at 1085.078 kb on + strand, within RR42_RS25585 at 1085.097 kb on - strand, within RR42_RS25585 at 1085.133 kb on - strand, within RR42_RS25585 at 1085.138 kb on + strand, within RR42_RS25585 at 1085.139 kb on - strand, within RR42_RS25585 at 1085.210 kb on + strand, within RR42_RS25585 at 1085.227 kb on + strand, within RR42_RS25585 at 1085.237 kb on + strand, within RR42_RS25585 at 1085.238 kb on - strand, within RR42_RS25585 at 1085.328 kb on - strand at 1085.447 kb on - strand at 1085.447 kb on - strand at 1085.612 kb on - strand at 1085.683 kb on + strand at 1085.723 kb on - strand at 1085.969 kb on - strand, within RR42_RS25590 at 1085.989 kb on + strand, within RR42_RS25590 at 1085.990 kb on - strand, within RR42_RS25590 at 1085.990 kb on - strand, within RR42_RS25590 at 1086.281 kb on - strand, within RR42_RS25590 at 1086.281 kb on - strand, within RR42_RS25590
Per-strain Table
Position Strand Gene LocusTag Fraction Pimelic (C) remove 1,083,328 - -2.2 1,083,350 + -1.1 1,083,350 + -0.1 1,083,351 - +0.2 1,083,431 + RR42_RS25580 0.21 +0.2 1,083,432 - RR42_RS25580 0.21 -0.9 1,083,432 - RR42_RS25580 0.21 -0.8 1,083,668 - RR42_RS25580 0.54 -0.7 1,083,705 + RR42_RS25580 0.60 +0.3 1,083,746 + RR42_RS25580 0.65 +2.8 1,083,746 + RR42_RS25580 0.65 -0.1 1,083,747 - RR42_RS25580 0.66 +0.1 1,083,875 + RR42_RS25580 0.84 +0.3 1,083,875 + RR42_RS25580 0.84 -0.0 1,083,876 - RR42_RS25580 0.84 -0.2 1,083,876 - RR42_RS25580 0.84 -0.1 1,084,116 + -0.2 1,084,116 + +0.8 1,084,117 - -0.9 1,084,131 + -0.5 1,084,199 + +0.3 1,084,307 + -0.3 1,084,308 - +0.3 1,084,335 - -0.1 1,084,453 + RR42_RS25585 0.19 -0.6 1,084,453 + RR42_RS25585 0.19 -0.5 1,084,728 - RR42_RS25585 0.43 +0.2 1,084,750 + RR42_RS25585 0.45 -1.1 1,084,887 - RR42_RS25585 0.57 +0.2 1,084,920 - RR42_RS25585 0.59 -1.9 1,084,920 - RR42_RS25585 0.59 -2.2 1,084,989 - RR42_RS25585 0.65 -0.3 1,084,989 - RR42_RS25585 0.65 -0.5 1,084,995 - RR42_RS25585 0.66 -2.9 1,085,075 + RR42_RS25585 0.73 +0.7 1,085,076 - RR42_RS25585 0.73 +0.3 1,085,078 + RR42_RS25585 0.73 +1.1 1,085,097 - RR42_RS25585 0.75 +0.0 1,085,133 - RR42_RS25585 0.78 +0.5 1,085,138 + RR42_RS25585 0.78 +0.6 1,085,139 - RR42_RS25585 0.78 -1.0 1,085,210 + RR42_RS25585 0.84 -1.0 1,085,227 + RR42_RS25585 0.86 +0.1 1,085,237 + RR42_RS25585 0.87 -0.2 1,085,238 - RR42_RS25585 0.87 +0.9 1,085,328 - +0.3 1,085,447 - -0.6 1,085,447 - +0.7 1,085,612 - +0.5 1,085,683 + +0.0 1,085,723 - -1.0 1,085,969 - RR42_RS25590 0.10 -0.2 1,085,989 + RR42_RS25590 0.13 -1.8 1,085,990 - RR42_RS25590 0.13 -1.3 1,085,990 - RR42_RS25590 0.13 -1.4 1,086,281 - RR42_RS25590 0.52 -0.4 1,086,281 - RR42_RS25590 0.52 -0.5
Or see this region's nucleotide sequence