Experiment: Pimelic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS24840 and RR42_RS24845 are separated by 51 nucleotides RR42_RS24845 and RR42_RS24850 overlap by 1 nucleotides RR42_RS24850 and RR42_RS24855 are separated by 32 nucleotides
RR42_RS24840: RR42_RS24840 - aldehyde dehydrogenase, at 910,456 to 911,916
_RS24840
RR42_RS24845: RR42_RS24845 - iditol 2-dehydrogenase, at 911,968 to 913,023
_RS24845
RR42_RS24850: RR42_RS24850 - alpha/beta hydrolase, at 913,023 to 913,943
_RS24850
RR42_RS24855: RR42_RS24855 - MFS transporter, at 913,976 to 915,304
_RS24855
Position (kb) 911
912
913
914 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 911.105 kb on + strand, within RR42_RS24840 at 911.412 kb on - strand, within RR42_RS24840 at 911.475 kb on - strand, within RR42_RS24840 at 911.483 kb on + strand, within RR42_RS24840 at 911.549 kb on + strand, within RR42_RS24840 at 911.845 kb on - strand at 911.873 kb on + strand at 912.055 kb on - strand at 912.241 kb on + strand, within RR42_RS24845 at 912.729 kb on - strand, within RR42_RS24845 at 912.896 kb on + strand, within RR42_RS24845 at 912.896 kb on + strand, within RR42_RS24845 at 913.091 kb on - strand at 913.100 kb on - strand at 913.355 kb on - strand, within RR42_RS24850 at 913.525 kb on + strand, within RR42_RS24850 at 913.526 kb on - strand, within RR42_RS24850 at 913.526 kb on - strand, within RR42_RS24850 at 913.692 kb on + strand, within RR42_RS24850 at 913.712 kb on - strand, within RR42_RS24850 at 913.858 kb on + strand at 913.993 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Pimelic (C) remove 911,105 + RR42_RS24840 0.44 -0.2 911,412 - RR42_RS24840 0.65 -0.5 911,475 - RR42_RS24840 0.70 +0.0 911,483 + RR42_RS24840 0.70 +0.3 911,549 + RR42_RS24840 0.75 -0.1 911,845 - -0.9 911,873 + -0.5 912,055 - -3.0 912,241 + RR42_RS24845 0.26 -0.7 912,729 - RR42_RS24845 0.72 +0.2 912,896 + RR42_RS24845 0.88 -1.3 912,896 + RR42_RS24845 0.88 -0.5 913,091 - -0.1 913,100 - +1.2 913,355 - RR42_RS24850 0.36 -0.5 913,525 + RR42_RS24850 0.55 -0.9 913,526 - RR42_RS24850 0.55 -0.4 913,526 - RR42_RS24850 0.55 +0.1 913,692 + RR42_RS24850 0.73 +1.9 913,712 - RR42_RS24850 0.75 -0.2 913,858 + -0.7 913,993 - +0.5
Or see this region's nucleotide sequence