Experiment: Pimelic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS24470 and RR42_RS24475 are separated by 149 nucleotides RR42_RS24475 and RR42_RS24480 are separated by 131 nucleotides RR42_RS24480 and RR42_RS24485 are separated by 182 nucleotides
RR42_RS24470: RR42_RS24470 - hypothetical protein, at 824,035 to 826,032
_RS24470
RR42_RS24475: RR42_RS24475 - hypothetical protein, at 826,182 to 826,547
_RS24475
RR42_RS24480: RR42_RS24480 - hypothetical protein, at 826,679 to 827,011
_RS24480
RR42_RS24485: RR42_RS24485 - hypothetical protein, at 827,194 to 827,631
_RS24485
Position (kb) 826
827 Strain fitness (log2 ratio) -1
0
1
2 at 825.190 kb on + strand, within RR42_RS24470 at 825.386 kb on + strand, within RR42_RS24470 at 825.387 kb on - strand, within RR42_RS24470 at 825.387 kb on - strand, within RR42_RS24470 at 825.387 kb on - strand, within RR42_RS24470 at 825.389 kb on + strand, within RR42_RS24470 at 825.575 kb on + strand, within RR42_RS24470 at 825.762 kb on + strand, within RR42_RS24470 at 825.763 kb on - strand, within RR42_RS24470 at 825.921 kb on - strand at 825.921 kb on - strand at 825.921 kb on - strand at 826.042 kb on - strand at 826.042 kb on - strand at 826.045 kb on + strand at 826.045 kb on + strand at 826.046 kb on - strand at 826.058 kb on + strand at 826.059 kb on - strand at 826.156 kb on - strand at 826.202 kb on + strand at 826.203 kb on - strand at 826.358 kb on - strand, within RR42_RS24475 at 826.423 kb on - strand, within RR42_RS24475 at 826.497 kb on + strand, within RR42_RS24475 at 826.504 kb on + strand, within RR42_RS24475 at 826.505 kb on - strand, within RR42_RS24475 at 826.511 kb on + strand at 826.719 kb on + strand, within RR42_RS24480 at 826.719 kb on + strand, within RR42_RS24480 at 826.825 kb on - strand, within RR42_RS24480 at 826.878 kb on + strand, within RR42_RS24480 at 826.879 kb on - strand, within RR42_RS24480 at 826.879 kb on - strand, within RR42_RS24480 at 826.879 kb on - strand, within RR42_RS24480 at 826.995 kb on + strand at 827.333 kb on + strand, within RR42_RS24485 at 827.368 kb on - strand, within RR42_RS24485 at 827.403 kb on + strand, within RR42_RS24485 at 827.403 kb on + strand, within RR42_RS24485 at 827.466 kb on - strand, within RR42_RS24485 at 827.495 kb on + strand, within RR42_RS24485 at 827.496 kb on - strand, within RR42_RS24485 at 827.496 kb on - strand, within RR42_RS24485 at 827.496 kb on - strand, within RR42_RS24485 at 827.529 kb on - strand, within RR42_RS24485
Per-strain Table
Position Strand Gene LocusTag Fraction Pimelic (C) remove 825,190 + RR42_RS24470 0.58 +0.1 825,386 + RR42_RS24470 0.68 -0.1 825,387 - RR42_RS24470 0.68 +0.3 825,387 - RR42_RS24470 0.68 +2.5 825,387 - RR42_RS24470 0.68 +0.3 825,389 + RR42_RS24470 0.68 +0.4 825,575 + RR42_RS24470 0.77 -0.2 825,762 + RR42_RS24470 0.86 -1.3 825,763 - RR42_RS24470 0.86 +0.5 825,921 - +0.6 825,921 - +0.4 825,921 - +0.3 826,042 - +0.7 826,042 - +0.2 826,045 + -0.1 826,045 + -0.4 826,046 - +1.5 826,058 + -0.0 826,059 - +0.4 826,156 - -0.3 826,202 + -0.2 826,203 - -0.3 826,358 - RR42_RS24475 0.48 -0.9 826,423 - RR42_RS24475 0.66 -0.8 826,497 + RR42_RS24475 0.86 +0.1 826,504 + RR42_RS24475 0.88 -1.1 826,505 - RR42_RS24475 0.88 +0.0 826,511 + +0.6 826,719 + RR42_RS24480 0.12 -0.5 826,719 + RR42_RS24480 0.12 -0.2 826,825 - RR42_RS24480 0.44 -0.6 826,878 + RR42_RS24480 0.60 +0.4 826,879 - RR42_RS24480 0.60 +1.9 826,879 - RR42_RS24480 0.60 +1.0 826,879 - RR42_RS24480 0.60 -1.2 826,995 + +0.7 827,333 + RR42_RS24485 0.32 -0.7 827,368 - RR42_RS24485 0.40 +0.4 827,403 + RR42_RS24485 0.48 +0.7 827,403 + RR42_RS24485 0.48 -0.3 827,466 - RR42_RS24485 0.62 -0.8 827,495 + RR42_RS24485 0.69 -1.1 827,496 - RR42_RS24485 0.69 -0.3 827,496 - RR42_RS24485 0.69 +0.0 827,496 - RR42_RS24485 0.69 +1.1 827,529 - RR42_RS24485 0.76 -0.6
Or see this region's nucleotide sequence