Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS21015

Experiment: Pimelic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS21010 and RR42_RS21015 are separated by 94 nucleotidesRR42_RS21015 and RR42_RS21020 are separated by 230 nucleotidesRR42_RS21020 and RR42_RS21025 are separated by 70 nucleotides RR42_RS21010: RR42_RS21010 - GDP-mannose 4,6-dehydratase, at 41,844 to 42,956 _RS21010 RR42_RS21015: RR42_RS21015 - mannose-1-phosphate guanyltransferase, at 43,051 to 44,475 _RS21015 RR42_RS21020: RR42_RS21020 - hypothetical protein, at 44,706 to 45,038 _RS21020 RR42_RS21025: RR42_RS21025 - lipoprotein, at 45,109 to 45,228 _RS21025 Position (kb) 43 44 45Strain fitness (log2 ratio) -2 -1 0 1at 42.226 kb on + strand, within RR42_RS21010at 42.227 kb on - strand, within RR42_RS21010at 42.227 kb on - strand, within RR42_RS21010at 42.322 kb on + strand, within RR42_RS21010at 42.322 kb on + strand, within RR42_RS21010at 42.439 kb on + strand, within RR42_RS21010at 42.439 kb on + strand, within RR42_RS21010at 42.439 kb on + strand, within RR42_RS21010at 42.439 kb on + strand, within RR42_RS21010at 42.440 kb on - strand, within RR42_RS21010at 42.440 kb on - strand, within RR42_RS21010at 42.460 kb on + strand, within RR42_RS21010at 42.485 kb on - strand, within RR42_RS21010at 42.502 kb on + strand, within RR42_RS21010at 42.502 kb on + strandat 42.509 kb on + strand, within RR42_RS21010at 42.586 kb on + strand, within RR42_RS21010at 42.586 kb on + strand, within RR42_RS21010at 42.670 kb on + strand, within RR42_RS21010at 42.671 kb on - strand, within RR42_RS21010at 42.830 kb on - strand, within RR42_RS21010at 42.922 kb on + strandat 42.923 kb on - strandat 42.941 kb on + strandat 43.064 kb on + strandat 43.064 kb on + strandat 43.068 kb on + strandat 43.069 kb on - strandat 43.104 kb on - strandat 43.104 kb on - strandat 43.104 kb on - strandat 43.184 kb on + strandat 43.184 kb on + strandat 43.184 kb on + strandat 43.184 kb on + strandat 43.184 kb on + strandat 43.185 kb on - strandat 43.185 kb on - strandat 43.185 kb on - strandat 43.185 kb on - strandat 43.211 kb on + strand, within RR42_RS21015at 43.334 kb on + strand, within RR42_RS21015at 43.382 kb on - strand, within RR42_RS21015at 43.382 kb on - strand, within RR42_RS21015at 43.382 kb on - strand, within RR42_RS21015at 43.712 kb on + strand, within RR42_RS21015at 43.850 kb on + strand, within RR42_RS21015at 43.851 kb on - strand, within RR42_RS21015at 43.996 kb on - strand, within RR42_RS21015at 43.996 kb on - strand, within RR42_RS21015at 43.997 kb on + strand, within RR42_RS21015at 43.997 kb on + strand, within RR42_RS21015at 44.452 kb on + strandat 44.582 kb on - strandat 44.824 kb on + strand, within RR42_RS21020at 44.824 kb on + strand, within RR42_RS21020at 44.825 kb on - strand, within RR42_RS21020at 44.924 kb on + strand, within RR42_RS21020at 44.941 kb on + strand, within RR42_RS21020at 45.274 kb on + strandat 45.309 kb on + strandat 45.309 kb on + strandat 45.309 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Pimelic (C)
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42,226 + RR42_RS21010 0.34 +1.1
42,227 - RR42_RS21010 0.34 +0.5
42,227 - RR42_RS21010 0.34 -0.3
42,322 + RR42_RS21010 0.43 -1.0
42,322 + RR42_RS21010 0.43 +1.3
42,439 + RR42_RS21010 0.53 +0.3
42,439 + RR42_RS21010 0.53 -0.1
42,439 + RR42_RS21010 0.53 -2.1
42,439 + RR42_RS21010 0.53 -0.6
42,440 - RR42_RS21010 0.54 +0.3
42,440 - RR42_RS21010 0.54 -0.3
42,460 + RR42_RS21010 0.55 -0.4
42,485 - RR42_RS21010 0.58 +0.2
42,502 + RR42_RS21010 0.59 -1.1
42,502 + +1.3
42,509 + RR42_RS21010 0.60 -0.5
42,586 + RR42_RS21010 0.67 -0.3
42,586 + RR42_RS21010 0.67 +1.3
42,670 + RR42_RS21010 0.74 -0.0
42,671 - RR42_RS21010 0.74 +0.1
42,830 - RR42_RS21010 0.89 -0.7
42,922 + +0.3
42,923 - -0.4
42,941 + -0.5
43,064 + -0.3
43,064 + +0.0
43,068 + -0.9
43,069 - -0.5
43,104 - -1.2
43,104 - -0.7
43,104 - -0.7
43,184 + -1.6
43,184 + -0.4
43,184 + -0.2
43,184 + -0.2
43,184 + -0.3
43,185 - +0.1
43,185 - -0.6
43,185 - +0.3
43,185 - -0.3
43,211 + RR42_RS21015 0.11 -0.1
43,334 + RR42_RS21015 0.20 +0.1
43,382 - RR42_RS21015 0.23 -0.6
43,382 - RR42_RS21015 0.23 -0.8
43,382 - RR42_RS21015 0.23 -0.5
43,712 + RR42_RS21015 0.46 +0.4
43,850 + RR42_RS21015 0.56 -0.5
43,851 - RR42_RS21015 0.56 -1.7
43,996 - RR42_RS21015 0.66 -0.2
43,996 - RR42_RS21015 0.66 -0.8
43,997 + RR42_RS21015 0.66 +0.4
43,997 + RR42_RS21015 0.66 +0.5
44,452 + +0.7
44,582 - +1.3
44,824 + RR42_RS21020 0.35 -1.7
44,824 + RR42_RS21020 0.35 -0.3
44,825 - RR42_RS21020 0.36 -0.1
44,924 + RR42_RS21020 0.65 +0.8
44,941 + RR42_RS21020 0.71 -0.1
45,274 + -0.3
45,309 + +0.7
45,309 + -0.2
45,309 + -0.8

Or see this region's nucleotide sequence