Experiment: Pimelic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS20370 and RR42_RS20375 are separated by 144 nucleotides RR42_RS20375 and RR42_RS20380 are separated by 25 nucleotides RR42_RS20380 and RR42_RS20385 are separated by 37 nucleotides
RR42_RS20370: RR42_RS20370 - pterin-4-alpha-carbinolamine dehydratase, at 4,411,804 to 4,412,121
_RS20370
RR42_RS20375: RR42_RS20375 - transcriptional regulator, at 4,412,266 to 4,412,970
_RS20375
RR42_RS20380: RR42_RS20380 - histidine kinase, at 4,412,996 to 4,414,615
_RS20380
RR42_RS20385: RR42_RS20385 - methyltransferase, at 4,414,653 to 4,415,192
_RS20385
Position (kb) 4412
4413
4414
4415 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 4412.008 kb on + strand, within RR42_RS20370 at 4412.159 kb on - strand at 4412.194 kb on + strand at 4412.271 kb on + strand at 4412.271 kb on + strand at 4412.557 kb on + strand, within RR42_RS20375 at 4412.558 kb on - strand, within RR42_RS20375 at 4412.606 kb on + strand, within RR42_RS20375 at 4412.607 kb on - strand, within RR42_RS20375 at 4412.872 kb on + strand, within RR42_RS20375 at 4412.872 kb on + strand, within RR42_RS20375 at 4412.872 kb on + strand, within RR42_RS20375 at 4412.872 kb on + strand, within RR42_RS20375 at 4412.941 kb on + strand at 4413.191 kb on + strand, within RR42_RS20380 at 4413.192 kb on - strand, within RR42_RS20380 at 4413.192 kb on - strand, within RR42_RS20380 at 4413.209 kb on + strand at 4413.222 kb on + strand, within RR42_RS20380 at 4413.239 kb on + strand, within RR42_RS20380 at 4413.240 kb on - strand, within RR42_RS20380 at 4413.240 kb on - strand, within RR42_RS20380 at 4413.256 kb on + strand, within RR42_RS20380 at 4413.353 kb on + strand, within RR42_RS20380 at 4413.353 kb on + strand, within RR42_RS20380 at 4413.452 kb on + strand, within RR42_RS20380 at 4413.452 kb on + strand, within RR42_RS20380 at 4413.453 kb on - strand, within RR42_RS20380 at 4414.271 kb on + strand, within RR42_RS20380 at 4414.271 kb on + strand, within RR42_RS20380 at 4414.272 kb on - strand, within RR42_RS20380 at 4414.272 kb on - strand, within RR42_RS20380 at 4414.272 kb on - strand, within RR42_RS20380 at 4414.272 kb on - strand, within RR42_RS20380 at 4414.423 kb on + strand, within RR42_RS20380 at 4414.423 kb on + strand, within RR42_RS20380 at 4414.756 kb on + strand, within RR42_RS20385 at 4414.780 kb on + strand, within RR42_RS20385 at 4414.780 kb on + strand, within RR42_RS20385 at 4414.780 kb on + strand, within RR42_RS20385 at 4414.781 kb on - strand, within RR42_RS20385 at 4414.781 kb on - strand, within RR42_RS20385 at 4414.786 kb on + strand, within RR42_RS20385 at 4414.786 kb on + strand, within RR42_RS20385 at 4414.786 kb on + strand, within RR42_RS20385 at 4414.786 kb on + strand, within RR42_RS20385 at 4414.786 kb on + strand, within RR42_RS20385 at 4414.786 kb on + strand, within RR42_RS20385 at 4414.786 kb on + strand, within RR42_RS20385 at 4414.786 kb on + strand, within RR42_RS20385 at 4414.787 kb on - strand, within RR42_RS20385 at 4414.787 kb on - strand, within RR42_RS20385 at 4414.787 kb on - strand, within RR42_RS20385 at 4414.787 kb on - strand, within RR42_RS20385 at 4414.787 kb on - strand, within RR42_RS20385 at 4414.787 kb on - strand, within RR42_RS20385 at 4414.787 kb on - strand, within RR42_RS20385 at 4414.948 kb on + strand, within RR42_RS20385 at 4414.948 kb on + strand, within RR42_RS20385 at 4414.948 kb on + strand, within RR42_RS20385 at 4414.948 kb on + strand, within RR42_RS20385 at 4414.948 kb on + strand, within RR42_RS20385 at 4414.949 kb on - strand, within RR42_RS20385 at 4414.955 kb on + strand, within RR42_RS20385 at 4414.955 kb on + strand, within RR42_RS20385 at 4414.955 kb on + strand, within RR42_RS20385 at 4414.955 kb on + strand, within RR42_RS20385 at 4414.956 kb on - strand, within RR42_RS20385 at 4414.956 kb on - strand, within RR42_RS20385 at 4414.956 kb on - strand, within RR42_RS20385 at 4414.956 kb on - strand, within RR42_RS20385 at 4415.026 kb on + strand, within RR42_RS20385 at 4415.027 kb on - strand, within RR42_RS20385 at 4415.027 kb on - strand, within RR42_RS20385 at 4415.027 kb on - strand, within RR42_RS20385 at 4415.027 kb on - strand, within RR42_RS20385 at 4415.069 kb on - strand, within RR42_RS20385 at 4415.231 kb on + strand at 4415.233 kb on + strand at 4415.233 kb on + strand at 4415.233 kb on + strand at 4415.234 kb on - strand at 4415.234 kb on - strand at 4415.234 kb on - strand at 4415.234 kb on - strand at 4415.234 kb on - strand at 4415.234 kb on - strand at 4415.234 kb on - strand at 4415.288 kb on + strand at 4415.288 kb on + strand at 4415.288 kb on + strand at 4415.288 kb on + strand at 4415.289 kb on - strand at 4415.289 kb on - strand at 4415.289 kb on - strand at 4415.299 kb on - strand at 4415.335 kb on - strand at 4415.335 kb on - strand at 4415.335 kb on - strand at 4415.359 kb on + strand at 4415.359 kb on + strand at 4415.359 kb on + strand at 4415.359 kb on + strand at 4415.359 kb on + strand at 4415.377 kb on + strand at 4415.378 kb on - strand at 4415.378 kb on - strand at 4415.378 kb on - strand at 4415.440 kb on + strand at 4415.440 kb on + strand at 4415.444 kb on + strand at 4415.444 kb on + strand at 4415.445 kb on - strand at 4415.445 kb on - strand at 4415.445 kb on - strand at 4415.447 kb on - strand at 4415.447 kb on - strand at 4415.447 kb on - strand at 4415.447 kb on - strand at 4415.447 kb on - strand at 4415.499 kb on + strand at 4415.555 kb on + strand at 4415.555 kb on + strand at 4415.559 kb on + strand at 4415.559 kb on + strand at 4415.560 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Pimelic (C) remove 4,412,008 + RR42_RS20370 0.64 -0.2 4,412,159 - -0.2 4,412,194 + +0.5 4,412,271 + -2.0 4,412,271 + -2.9 4,412,557 + RR42_RS20375 0.41 -2.9 4,412,558 - RR42_RS20375 0.41 -2.3 4,412,606 + RR42_RS20375 0.48 -3.4 4,412,607 - RR42_RS20375 0.48 -2.2 4,412,872 + RR42_RS20375 0.86 -3.0 4,412,872 + RR42_RS20375 0.86 -3.5 4,412,872 + RR42_RS20375 0.86 +1.4 4,412,872 + RR42_RS20375 0.86 -0.2 4,412,941 + -2.6 4,413,191 + RR42_RS20380 0.12 -3.8 4,413,192 - RR42_RS20380 0.12 -4.2 4,413,192 - RR42_RS20380 0.12 -0.3 4,413,209 + -1.4 4,413,222 + RR42_RS20380 0.14 -1.9 4,413,239 + RR42_RS20380 0.15 +0.4 4,413,240 - RR42_RS20380 0.15 -2.7 4,413,240 - RR42_RS20380 0.15 -0.6 4,413,256 + RR42_RS20380 0.16 -2.3 4,413,353 + RR42_RS20380 0.22 -3.7 4,413,353 + RR42_RS20380 0.22 -3.7 4,413,452 + RR42_RS20380 0.28 +0.4 4,413,452 + RR42_RS20380 0.28 +1.4 4,413,453 - RR42_RS20380 0.28 -3.0 4,414,271 + RR42_RS20380 0.79 -1.3 4,414,271 + RR42_RS20380 0.79 -3.4 4,414,272 - RR42_RS20380 0.79 -0.4 4,414,272 - RR42_RS20380 0.79 -2.8 4,414,272 - RR42_RS20380 0.79 -2.3 4,414,272 - RR42_RS20380 0.79 -2.7 4,414,423 + RR42_RS20380 0.88 -1.6 4,414,423 + RR42_RS20380 0.88 -2.9 4,414,756 + RR42_RS20385 0.19 +0.3 4,414,780 + RR42_RS20385 0.24 -0.2 4,414,780 + RR42_RS20385 0.24 -1.1 4,414,780 + RR42_RS20385 0.24 -0.7 4,414,781 - RR42_RS20385 0.24 -0.3 4,414,781 - RR42_RS20385 0.24 +0.1 4,414,786 + RR42_RS20385 0.25 +0.3 4,414,786 + RR42_RS20385 0.25 -1.3 4,414,786 + RR42_RS20385 0.25 -0.4 4,414,786 + RR42_RS20385 0.25 -0.0 4,414,786 + RR42_RS20385 0.25 +1.2 4,414,786 + RR42_RS20385 0.25 +0.7 4,414,786 + RR42_RS20385 0.25 +0.4 4,414,786 + RR42_RS20385 0.25 +0.3 4,414,787 - RR42_RS20385 0.25 -0.6 4,414,787 - RR42_RS20385 0.25 -0.3 4,414,787 - RR42_RS20385 0.25 -0.8 4,414,787 - RR42_RS20385 0.25 -0.5 4,414,787 - RR42_RS20385 0.25 -0.2 4,414,787 - RR42_RS20385 0.25 +0.5 4,414,787 - RR42_RS20385 0.25 -1.0 4,414,948 + RR42_RS20385 0.55 -2.2 4,414,948 + RR42_RS20385 0.55 +0.1 4,414,948 + RR42_RS20385 0.55 +0.2 4,414,948 + RR42_RS20385 0.55 +0.7 4,414,948 + RR42_RS20385 0.55 -0.9 4,414,949 - RR42_RS20385 0.55 -0.4 4,414,955 + RR42_RS20385 0.56 -0.6 4,414,955 + RR42_RS20385 0.56 +0.7 4,414,955 + RR42_RS20385 0.56 -0.8 4,414,955 + RR42_RS20385 0.56 -0.8 4,414,956 - RR42_RS20385 0.56 -0.8 4,414,956 - RR42_RS20385 0.56 -0.8 4,414,956 - RR42_RS20385 0.56 -0.9 4,414,956 - RR42_RS20385 0.56 +0.3 4,415,026 + RR42_RS20385 0.69 -0.8 4,415,027 - RR42_RS20385 0.69 +0.3 4,415,027 - RR42_RS20385 0.69 +0.8 4,415,027 - RR42_RS20385 0.69 +2.0 4,415,027 - RR42_RS20385 0.69 +0.6 4,415,069 - RR42_RS20385 0.77 +1.4 4,415,231 + +0.1 4,415,233 + +2.4 4,415,233 + +0.0 4,415,233 + -0.6 4,415,234 - -0.5 4,415,234 - -0.8 4,415,234 - +0.7 4,415,234 - -1.2 4,415,234 - +0.3 4,415,234 - -0.2 4,415,234 - +0.2 4,415,288 + +0.4 4,415,288 + -0.4 4,415,288 + +1.3 4,415,288 + -0.9 4,415,289 - -0.4 4,415,289 - +0.4 4,415,289 - +0.2 4,415,299 - +0.3 4,415,335 - +1.1 4,415,335 - -0.1 4,415,335 - -0.2 4,415,359 + +0.1 4,415,359 + -0.4 4,415,359 + +2.4 4,415,359 + -0.4 4,415,359 + +0.6 4,415,377 + -0.3 4,415,378 - -0.0 4,415,378 - +1.4 4,415,378 - -0.1 4,415,440 + +1.6 4,415,440 + +1.0 4,415,444 + +0.8 4,415,444 + -0.1 4,415,445 - -0.2 4,415,445 - -0.4 4,415,445 - +0.7 4,415,447 - +1.1 4,415,447 - +0.1 4,415,447 - +0.7 4,415,447 - +0.2 4,415,447 - +0.6 4,415,499 + +0.0 4,415,555 + +2.6 4,415,555 + +0.7 4,415,559 + +0.4 4,415,559 + +1.4 4,415,560 - -1.0
Or see this region's nucleotide sequence