Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS10630

Experiment: Pimelic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS10625 and RR42_RS10630 are separated by 29 nucleotidesRR42_RS10630 and RR42_RS10635 are separated by 134 nucleotides RR42_RS10625: RR42_RS10625 - glucarate dehydratase, at 2,269,806 to 2,271,164 _RS10625 RR42_RS10630: RR42_RS10630 - hypothetical protein, at 2,271,194 to 2,271,544 _RS10630 RR42_RS10635: RR42_RS10635 - hypothetical protein, at 2,271,679 to 2,272,431 _RS10635 Position (kb) 2271 2272Strain fitness (log2 ratio) -1 0 1at 2271.654 kb on + strandat 2271.687 kb on + strandat 2271.823 kb on + strand, within RR42_RS10635at 2271.823 kb on + strand, within RR42_RS10635at 2271.823 kb on + strand, within RR42_RS10635at 2271.824 kb on - strand, within RR42_RS10635at 2271.925 kb on - strand, within RR42_RS10635

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Per-strain Table

Position Strand Gene LocusTag Fraction Pimelic (C)
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2,271,654 + -0.6
2,271,687 + +1.7
2,271,823 + RR42_RS10635 0.19 +0.7
2,271,823 + RR42_RS10635 0.19 -0.3
2,271,823 + RR42_RS10635 0.19 -0.0
2,271,824 - RR42_RS10635 0.19 -0.2
2,271,925 - RR42_RS10635 0.33 -0.7

Or see this region's nucleotide sequence