Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS09330

Experiment: Pimelic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS09320 and RR42_RS09325 overlap by 4 nucleotidesRR42_RS09325 and RR42_RS09330 are separated by 55 nucleotidesRR42_RS09330 and RR42_RS09335 are separated by 336 nucleotides RR42_RS09320: RR42_RS09320 - long-chain fatty acid--CoA ligase, at 1,970,561 to 1,972,123 _RS09320 RR42_RS09325: RR42_RS09325 - citrate synthase, at 1,972,120 to 1,972,917 _RS09325 RR42_RS09330: RR42_RS09330 - 3-oxoacyl-ACP reductase, at 1,972,973 to 1,973,773 _RS09330 RR42_RS09335: RR42_RS09335 - DNA polymerase II, at 1,974,110 to 1,976,485 _RS09335 Position (kb) 1972 1973 1974Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1972.174 kb on - strandat 1972.363 kb on + strand, within RR42_RS09325at 1972.363 kb on + strand, within RR42_RS09325at 1972.364 kb on - strand, within RR42_RS09325at 1972.523 kb on - strand, within RR42_RS09325at 1972.591 kb on + strand, within RR42_RS09325at 1972.698 kb on + strand, within RR42_RS09325at 1972.698 kb on + strand, within RR42_RS09325at 1972.699 kb on - strand, within RR42_RS09325at 1972.877 kb on - strandat 1973.066 kb on + strand, within RR42_RS09330at 1973.432 kb on + strand, within RR42_RS09330at 1973.433 kb on - strand, within RR42_RS09330at 1973.433 kb on - strand, within RR42_RS09330at 1973.510 kb on + strand, within RR42_RS09330at 1973.510 kb on + strand, within RR42_RS09330at 1973.511 kb on - strand, within RR42_RS09330at 1973.511 kb on - strand, within RR42_RS09330at 1973.511 kb on - strand, within RR42_RS09330at 1973.511 kb on - strand, within RR42_RS09330at 1973.511 kb on - strand, within RR42_RS09330at 1973.717 kb on + strandat 1973.717 kb on + strandat 1973.801 kb on - strandat 1973.801 kb on - strandat 1973.801 kb on - strandat 1973.835 kb on - strandat 1974.073 kb on - strandat 1974.359 kb on + strand, within RR42_RS09335at 1974.359 kb on + strand, within RR42_RS09335at 1974.425 kb on + strand, within RR42_RS09335at 1974.426 kb on - strand, within RR42_RS09335at 1974.563 kb on + strand, within RR42_RS09335at 1974.662 kb on + strand, within RR42_RS09335at 1974.662 kb on + strand, within RR42_RS09335at 1974.663 kb on - strand, within RR42_RS09335at 1974.663 kb on - strand, within RR42_RS09335at 1974.663 kb on - strand, within RR42_RS09335at 1974.663 kb on - strand, within RR42_RS09335at 1974.664 kb on + strand, within RR42_RS09335at 1974.665 kb on - strand, within RR42_RS09335at 1974.665 kb on - strand, within RR42_RS09335at 1974.665 kb on - strand, within RR42_RS09335at 1974.717 kb on - strand, within RR42_RS09335

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Per-strain Table

Position Strand Gene LocusTag Fraction Pimelic (C)
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1,972,174 - -2.5
1,972,363 + RR42_RS09325 0.30 -0.4
1,972,363 + RR42_RS09325 0.30 +0.0
1,972,364 - RR42_RS09325 0.31 +0.8
1,972,523 - RR42_RS09325 0.51 -0.1
1,972,591 + RR42_RS09325 0.59 +0.6
1,972,698 + RR42_RS09325 0.72 -0.6
1,972,698 + RR42_RS09325 0.72 +0.3
1,972,699 - RR42_RS09325 0.73 +3.1
1,972,877 - -0.2
1,973,066 + RR42_RS09330 0.12 -0.6
1,973,432 + RR42_RS09330 0.57 -0.8
1,973,433 - RR42_RS09330 0.57 -0.4
1,973,433 - RR42_RS09330 0.57 -0.0
1,973,510 + RR42_RS09330 0.67 +0.4
1,973,510 + RR42_RS09330 0.67 -0.6
1,973,511 - RR42_RS09330 0.67 -0.9
1,973,511 - RR42_RS09330 0.67 -0.4
1,973,511 - RR42_RS09330 0.67 -0.5
1,973,511 - RR42_RS09330 0.67 -0.2
1,973,511 - RR42_RS09330 0.67 -1.1
1,973,717 + -1.3
1,973,717 + -1.5
1,973,801 - -0.7
1,973,801 - +0.8
1,973,801 - +0.8
1,973,835 - -1.7
1,974,073 - +0.5
1,974,359 + RR42_RS09335 0.10 -0.8
1,974,359 + RR42_RS09335 0.10 -0.5
1,974,425 + RR42_RS09335 0.13 -0.4
1,974,426 - RR42_RS09335 0.13 +0.2
1,974,563 + RR42_RS09335 0.19 -0.1
1,974,662 + RR42_RS09335 0.23 -0.6
1,974,662 + RR42_RS09335 0.23 -0.2
1,974,663 - RR42_RS09335 0.23 -0.6
1,974,663 - RR42_RS09335 0.23 -0.2
1,974,663 - RR42_RS09335 0.23 -0.2
1,974,663 - RR42_RS09335 0.23 -0.7
1,974,664 + RR42_RS09335 0.23 +0.0
1,974,665 - RR42_RS09335 0.23 -0.3
1,974,665 - RR42_RS09335 0.23 +0.5
1,974,665 - RR42_RS09335 0.23 +2.3
1,974,717 - RR42_RS09335 0.26 -2.0

Or see this region's nucleotide sequence