Experiment: Pimelic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS03380 and RR42_RS03385 are separated by 44 nucleotides RR42_RS03385 and RR42_RS03390 are separated by 151 nucleotides
RR42_RS03380: RR42_RS03380 - glucose-6-phosphate isomerase, at 752,082 to 753,722
_RS03380
RR42_RS03385: RR42_RS03385 - sugar kinase, at 753,767 to 754,696
_RS03385
RR42_RS03390: RR42_RS03390 - ABC transporter substrate-binding protein, at 754,848 to 755,816
_RS03390
Position (kb) 753
754
755 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 753.791 kb on + strand at 753.791 kb on + strand at 753.792 kb on - strand at 753.958 kb on - strand, within RR42_RS03385 at 754.058 kb on + strand, within RR42_RS03385 at 754.277 kb on + strand, within RR42_RS03385 at 754.297 kb on + strand, within RR42_RS03385 at 754.316 kb on + strand, within RR42_RS03385 at 754.317 kb on - strand, within RR42_RS03385 at 754.317 kb on - strand, within RR42_RS03385 at 754.317 kb on - strand, within RR42_RS03385 at 754.504 kb on + strand, within RR42_RS03385 at 754.637 kb on + strand at 754.638 kb on - strand at 754.638 kb on - strand at 755.189 kb on - strand, within RR42_RS03390 at 755.359 kb on + strand, within RR42_RS03390 at 755.365 kb on + strand, within RR42_RS03390 at 755.366 kb on - strand, within RR42_RS03390 at 755.407 kb on + strand, within RR42_RS03390 at 755.407 kb on + strand, within RR42_RS03390 at 755.408 kb on - strand, within RR42_RS03390 at 755.408 kb on - strand, within RR42_RS03390 at 755.497 kb on + strand, within RR42_RS03390 at 755.563 kb on + strand, within RR42_RS03390
Per-strain Table
Position Strand Gene LocusTag Fraction Pimelic (C) remove 753,791 + -1.4 753,791 + -1.0 753,792 - -1.4 753,958 - RR42_RS03385 0.21 -2.1 754,058 + RR42_RS03385 0.31 -4.2 754,277 + RR42_RS03385 0.55 -1.0 754,297 + RR42_RS03385 0.57 -2.6 754,316 + RR42_RS03385 0.59 -1.9 754,317 - RR42_RS03385 0.59 -0.4 754,317 - RR42_RS03385 0.59 -2.5 754,317 - RR42_RS03385 0.59 -1.7 754,504 + RR42_RS03385 0.79 -2.7 754,637 + -1.2 754,638 - -0.3 754,638 - -1.3 755,189 - RR42_RS03390 0.35 +0.2 755,359 + RR42_RS03390 0.53 -1.4 755,365 + RR42_RS03390 0.53 -0.5 755,366 - RR42_RS03390 0.53 -0.3 755,407 + RR42_RS03390 0.58 +0.7 755,407 + RR42_RS03390 0.58 -0.1 755,408 - RR42_RS03390 0.58 +0.8 755,408 - RR42_RS03390 0.58 -0.3 755,497 + RR42_RS03390 0.67 -0.3 755,563 + RR42_RS03390 0.74 -0.9
Or see this region's nucleotide sequence