Experiment: Pimelic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS03040 and RR42_RS03045 are separated by 110 nucleotides RR42_RS03045 and RR42_RS03050 are separated by 106 nucleotides
RR42_RS03040: RR42_RS03040 - Outer membrane protein (NodT-like) required for 4-hydroxybenzoate transport, together with FUSC, MFP, and DUF1656 proteins (RR42_RS03025, RR42_RS03035, and RR42_RS03030) <small>(from data)</small>, at 672,626 to 674,089
_RS03040
RR42_RS03045: RR42_RS03045 - dioxygenase, at 674,200 to 675,021
_RS03045
RR42_RS03050: RR42_RS03050 - energy transducer TonB, at 675,128 to 675,868
_RS03050
Position (kb) 674
675
676 Strain fitness (log2 ratio) -2
-1
0
1
2 at 673.333 kb on - strand, within RR42_RS03040 at 673.436 kb on + strand, within RR42_RS03040 at 673.814 kb on + strand, within RR42_RS03040 at 673.815 kb on - strand, within RR42_RS03040 at 673.897 kb on - strand, within RR42_RS03040 at 673.897 kb on - strand, within RR42_RS03040 at 673.897 kb on - strand, within RR42_RS03040 at 673.898 kb on + strand, within RR42_RS03040 at 673.898 kb on + strand, within RR42_RS03040 at 673.898 kb on + strand, within RR42_RS03040 at 673.899 kb on - strand, within RR42_RS03040 at 673.919 kb on + strand, within RR42_RS03040 at 673.920 kb on - strand, within RR42_RS03040 at 674.127 kb on - strand at 674.216 kb on - strand at 674.407 kb on + strand, within RR42_RS03045 at 674.408 kb on - strand, within RR42_RS03045 at 674.408 kb on - strand, within RR42_RS03045 at 674.408 kb on - strand, within RR42_RS03045 at 674.473 kb on + strand, within RR42_RS03045 at 674.474 kb on - strand, within RR42_RS03045 at 674.530 kb on + strand, within RR42_RS03045 at 674.530 kb on + strand, within RR42_RS03045 at 674.530 kb on + strand, within RR42_RS03045 at 674.530 kb on + strand, within RR42_RS03045 at 674.530 kb on + strand, within RR42_RS03045 at 674.531 kb on - strand, within RR42_RS03045 at 674.531 kb on - strand, within RR42_RS03045 at 674.531 kb on - strand, within RR42_RS03045 at 674.531 kb on - strand, within RR42_RS03045 at 674.531 kb on - strand, within RR42_RS03045 at 674.531 kb on - strand, within RR42_RS03045 at 674.531 kb on - strand, within RR42_RS03045 at 674.531 kb on - strand, within RR42_RS03045 at 674.532 kb on + strand, within RR42_RS03045 at 674.532 kb on + strand, within RR42_RS03045 at 674.532 kb on + strand, within RR42_RS03045 at 674.532 kb on + strand, within RR42_RS03045 at 674.532 kb on + strand, within RR42_RS03045 at 674.533 kb on - strand, within RR42_RS03045 at 674.552 kb on - strand, within RR42_RS03045 at 674.552 kb on - strand, within RR42_RS03045 at 674.819 kb on - strand, within RR42_RS03045 at 674.969 kb on + strand at 675.762 kb on + strand, within RR42_RS03050 at 675.762 kb on + strand, within RR42_RS03050 at 675.766 kb on - strand, within RR42_RS03050 at 675.766 kb on - strand, within RR42_RS03050 at 675.766 kb on - strand, within RR42_RS03050 at 675.846 kb on + strand at 675.847 kb on - strand at 675.847 kb on - strand at 675.900 kb on + strand at 675.900 kb on + strand at 675.900 kb on + strand at 675.900 kb on + strand at 675.900 kb on + strand at 675.901 kb on - strand at 675.901 kb on - strand at 675.901 kb on - strand at 675.901 kb on - strand at 676.004 kb on + strand at 676.004 kb on + strand at 676.004 kb on + strand at 676.004 kb on + strand at 676.005 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Pimelic (C) remove 673,333 - RR42_RS03040 0.48 -0.5 673,436 + RR42_RS03040 0.55 -0.5 673,814 + RR42_RS03040 0.81 -0.4 673,815 - RR42_RS03040 0.81 -0.7 673,897 - RR42_RS03040 0.87 +0.0 673,897 - RR42_RS03040 0.87 +0.6 673,897 - RR42_RS03040 0.87 +0.1 673,898 + RR42_RS03040 0.87 +0.2 673,898 + RR42_RS03040 0.87 +0.2 673,898 + RR42_RS03040 0.87 -0.7 673,899 - RR42_RS03040 0.87 +0.0 673,919 + RR42_RS03040 0.88 +0.2 673,920 - RR42_RS03040 0.88 -0.3 674,127 - -0.6 674,216 - -0.1 674,407 + RR42_RS03045 0.25 +1.2 674,408 - RR42_RS03045 0.25 +1.8 674,408 - RR42_RS03045 0.25 +0.3 674,408 - RR42_RS03045 0.25 +1.2 674,473 + RR42_RS03045 0.33 +1.2 674,474 - RR42_RS03045 0.33 -1.1 674,530 + RR42_RS03045 0.40 -0.4 674,530 + RR42_RS03045 0.40 +1.2 674,530 + RR42_RS03045 0.40 +0.2 674,530 + RR42_RS03045 0.40 -0.7 674,530 + RR42_RS03045 0.40 +2.2 674,531 - RR42_RS03045 0.40 +0.1 674,531 - RR42_RS03045 0.40 +0.0 674,531 - RR42_RS03045 0.40 +1.1 674,531 - RR42_RS03045 0.40 +0.5 674,531 - RR42_RS03045 0.40 +0.9 674,531 - RR42_RS03045 0.40 +1.3 674,531 - RR42_RS03045 0.40 +1.2 674,531 - RR42_RS03045 0.40 -1.6 674,532 + RR42_RS03045 0.40 +0.5 674,532 + RR42_RS03045 0.40 +0.2 674,532 + RR42_RS03045 0.40 -0.8 674,532 + RR42_RS03045 0.40 -0.0 674,532 + RR42_RS03045 0.40 -0.8 674,533 - RR42_RS03045 0.41 -0.1 674,552 - RR42_RS03045 0.43 -0.6 674,552 - RR42_RS03045 0.43 -0.6 674,819 - RR42_RS03045 0.75 +1.5 674,969 + +1.2 675,762 + RR42_RS03050 0.86 -0.0 675,762 + RR42_RS03050 0.86 -0.3 675,766 - RR42_RS03050 0.86 -0.4 675,766 - RR42_RS03050 0.86 -1.1 675,766 - RR42_RS03050 0.86 +0.2 675,846 + -2.2 675,847 - +1.5 675,847 - +1.2 675,900 + -0.4 675,900 + -0.1 675,900 + -0.6 675,900 + -0.1 675,900 + +0.6 675,901 - +0.9 675,901 - -0.8 675,901 - -0.5 675,901 - -0.0 676,004 + -0.0 676,004 + +0.2 676,004 + +0.5 676,004 + +0.6 676,005 - -0.2
Or see this region's nucleotide sequence