Experiment: Pimelic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS02445 and RR42_RS02450 are separated by 65 nucleotides RR42_RS02450 and RR42_RS02455 are separated by 33 nucleotides
RR42_RS02445: RR42_RS02445 - aspartyl-tRNA synthetase, at 549,551 to 551,356
_RS02445
RR42_RS02450: RR42_RS02450 - MFS transporter, at 551,422 to 552,729
_RS02450
RR42_RS02455: RR42_RS02455 - agmatinase, at 552,763 to 553,749
_RS02455
Position (kb) 551
552
553 Strain fitness (log2 ratio) -1
0
1
2 at 551.503 kb on + strand at 551.522 kb on + strand at 551.522 kb on + strand at 551.522 kb on + strand at 551.522 kb on + strand at 551.522 kb on + strand at 551.523 kb on - strand at 551.642 kb on + strand, within RR42_RS02450 at 551.642 kb on + strand, within RR42_RS02450 at 551.694 kb on - strand, within RR42_RS02450 at 551.711 kb on - strand, within RR42_RS02450 at 551.737 kb on + strand, within RR42_RS02450 at 551.737 kb on + strand, within RR42_RS02450 at 551.933 kb on + strand, within RR42_RS02450 at 551.945 kb on + strand, within RR42_RS02450 at 551.945 kb on + strand, within RR42_RS02450 at 551.946 kb on - strand, within RR42_RS02450 at 551.973 kb on - strand, within RR42_RS02450 at 551.973 kb on - strand, within RR42_RS02450 at 551.973 kb on - strand, within RR42_RS02450 at 551.990 kb on + strand, within RR42_RS02450 at 551.990 kb on + strand, within RR42_RS02450 at 551.991 kb on - strand, within RR42_RS02450 at 552.034 kb on + strand, within RR42_RS02450 at 552.034 kb on + strand, within RR42_RS02450 at 552.035 kb on - strand, within RR42_RS02450 at 552.035 kb on - strand, within RR42_RS02450 at 552.035 kb on - strand, within RR42_RS02450 at 552.282 kb on + strand, within RR42_RS02450 at 552.283 kb on - strand, within RR42_RS02450 at 552.410 kb on + strand, within RR42_RS02450 at 552.410 kb on + strand, within RR42_RS02450 at 552.410 kb on + strand, within RR42_RS02450 at 552.410 kb on + strand, within RR42_RS02450 at 552.411 kb on - strand, within RR42_RS02450 at 552.411 kb on - strand, within RR42_RS02450 at 552.411 kb on - strand, within RR42_RS02450 at 552.415 kb on - strand, within RR42_RS02450 at 552.415 kb on - strand, within RR42_RS02450 at 552.415 kb on - strand, within RR42_RS02450 at 552.415 kb on - strand, within RR42_RS02450 at 552.415 kb on - strand, within RR42_RS02450 at 552.415 kb on - strand, within RR42_RS02450 at 552.415 kb on - strand, within RR42_RS02450 at 552.415 kb on - strand, within RR42_RS02450 at 552.415 kb on - strand, within RR42_RS02450 at 552.638 kb on + strand at 552.639 kb on - strand at 552.639 kb on - strand at 552.644 kb on + strand at 552.653 kb on + strand at 552.721 kb on - strand at 552.803 kb on - strand at 552.803 kb on - strand at 552.854 kb on + strand at 552.913 kb on + strand, within RR42_RS02455 at 552.913 kb on + strand, within RR42_RS02455 at 552.913 kb on + strand, within RR42_RS02455 at 552.913 kb on + strand, within RR42_RS02455 at 552.913 kb on + strand, within RR42_RS02455 at 552.913 kb on + strand, within RR42_RS02455 at 552.914 kb on - strand, within RR42_RS02455 at 552.914 kb on - strand, within RR42_RS02455 at 552.914 kb on - strand, within RR42_RS02455 at 552.977 kb on + strand, within RR42_RS02455 at 552.977 kb on + strand, within RR42_RS02455 at 553.013 kb on + strand, within RR42_RS02455 at 553.014 kb on - strand, within RR42_RS02455 at 553.508 kb on + strand, within RR42_RS02455 at 553.508 kb on + strand, within RR42_RS02455 at 553.509 kb on - strand, within RR42_RS02455
Per-strain Table
Position Strand Gene LocusTag Fraction Pimelic (C) remove 551,503 + +0.7 551,522 + +0.3 551,522 + +0.4 551,522 + -0.3 551,522 + -0.0 551,522 + +0.1 551,523 - +0.4 551,642 + RR42_RS02450 0.17 +0.1 551,642 + RR42_RS02450 0.17 -0.5 551,694 - RR42_RS02450 0.21 +0.6 551,711 - RR42_RS02450 0.22 +0.7 551,737 + RR42_RS02450 0.24 -0.8 551,737 + RR42_RS02450 0.24 -0.7 551,933 + RR42_RS02450 0.39 +0.7 551,945 + RR42_RS02450 0.40 +2.5 551,945 + RR42_RS02450 0.40 -0.4 551,946 - RR42_RS02450 0.40 +1.2 551,973 - RR42_RS02450 0.42 +1.0 551,973 - RR42_RS02450 0.42 +0.0 551,973 - RR42_RS02450 0.42 -0.2 551,990 + RR42_RS02450 0.43 +0.4 551,990 + RR42_RS02450 0.43 -0.5 551,991 - RR42_RS02450 0.44 +0.3 552,034 + RR42_RS02450 0.47 -0.0 552,034 + RR42_RS02450 0.47 -1.2 552,035 - RR42_RS02450 0.47 -1.5 552,035 - RR42_RS02450 0.47 +0.3 552,035 - RR42_RS02450 0.47 -0.7 552,282 + RR42_RS02450 0.66 +0.3 552,283 - RR42_RS02450 0.66 +1.3 552,410 + RR42_RS02450 0.76 +0.7 552,410 + RR42_RS02450 0.76 -0.2 552,410 + RR42_RS02450 0.76 +0.1 552,410 + RR42_RS02450 0.76 -0.1 552,411 - RR42_RS02450 0.76 +0.6 552,411 - RR42_RS02450 0.76 -1.3 552,411 - RR42_RS02450 0.76 +0.7 552,415 - RR42_RS02450 0.76 +0.7 552,415 - RR42_RS02450 0.76 -0.3 552,415 - RR42_RS02450 0.76 +0.4 552,415 - RR42_RS02450 0.76 -0.1 552,415 - RR42_RS02450 0.76 +0.7 552,415 - RR42_RS02450 0.76 -0.1 552,415 - RR42_RS02450 0.76 -0.1 552,415 - RR42_RS02450 0.76 -0.3 552,415 - RR42_RS02450 0.76 +0.3 552,638 + -0.2 552,639 - -0.3 552,639 - -0.1 552,644 + -0.0 552,653 + -0.4 552,721 - +0.2 552,803 - +0.5 552,803 - -0.0 552,854 + -0.1 552,913 + RR42_RS02455 0.15 -0.4 552,913 + RR42_RS02455 0.15 +1.3 552,913 + RR42_RS02455 0.15 -1.3 552,913 + RR42_RS02455 0.15 -1.3 552,913 + RR42_RS02455 0.15 -0.1 552,913 + RR42_RS02455 0.15 +1.3 552,914 - RR42_RS02455 0.15 +0.1 552,914 - RR42_RS02455 0.15 -1.2 552,914 - RR42_RS02455 0.15 +1.3 552,977 + RR42_RS02455 0.22 -0.3 552,977 + RR42_RS02455 0.22 +2.0 553,013 + RR42_RS02455 0.25 +1.3 553,014 - RR42_RS02455 0.25 +1.3 553,508 + RR42_RS02455 0.75 +0.1 553,508 + RR42_RS02455 0.75 +0.1 553,509 - RR42_RS02455 0.76 +0.0
Or see this region's nucleotide sequence