Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS01620

Experiment: Pimelic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS01615 and RR42_RS01620 are separated by 58 nucleotidesRR42_RS01620 and RR42_RS01625 are separated by 236 nucleotides RR42_RS01615: RR42_RS01615 - aerotaxis receptor Aer, at 367,467 to 369,011 _RS01615 RR42_RS01620: RR42_RS01620 - Crp/Fnr family transcriptional regulator, at 369,070 to 369,738 _RS01620 RR42_RS01625: RR42_RS01625 - long-chain fatty acid--CoA ligase, at 369,975 to 371,945 _RS01625 Position (kb) 369 370Strain fitness (log2 ratio) -3 -2 -1 0 1at 368.186 kb on + strand, within RR42_RS01615at 368.365 kb on + strand, within RR42_RS01615at 368.365 kb on + strand, within RR42_RS01615at 368.792 kb on + strand, within RR42_RS01615at 368.847 kb on - strand, within RR42_RS01615at 369.106 kb on + strandat 369.106 kb on + strandat 369.107 kb on - strandat 369.107 kb on - strandat 369.123 kb on - strandat 369.187 kb on + strand, within RR42_RS01620at 369.188 kb on - strand, within RR42_RS01620at 369.248 kb on + strand, within RR42_RS01620at 369.464 kb on + strand, within RR42_RS01620at 369.619 kb on - strand, within RR42_RS01620at 369.630 kb on - strand, within RR42_RS01620at 369.643 kb on - strand, within RR42_RS01620at 369.676 kb on - strandat 369.812 kb on + strandat 369.817 kb on + strandat 369.817 kb on + strandat 369.817 kb on + strandat 369.817 kb on + strandat 369.817 kb on + strandat 369.909 kb on + strandat 369.909 kb on + strandat 369.911 kb on + strandat 369.912 kb on - strandat 369.912 kb on - strandat 370.083 kb on + strandat 370.084 kb on - strandat 370.084 kb on - strandat 370.084 kb on - strandat 370.084 kb on - strandat 370.198 kb on - strand, within RR42_RS01625at 370.249 kb on - strand, within RR42_RS01625at 370.249 kb on - strand, within RR42_RS01625at 370.278 kb on + strand, within RR42_RS01625at 370.278 kb on + strand, within RR42_RS01625at 370.278 kb on + strand, within RR42_RS01625at 370.279 kb on - strand, within RR42_RS01625at 370.279 kb on - strand, within RR42_RS01625at 370.364 kb on - strand, within RR42_RS01625at 370.398 kb on + strand, within RR42_RS01625at 370.425 kb on + strand, within RR42_RS01625at 370.501 kb on - strand, within RR42_RS01625at 370.554 kb on + strand, within RR42_RS01625at 370.674 kb on + strand, within RR42_RS01625at 370.675 kb on - strand, within RR42_RS01625at 370.675 kb on - strand, within RR42_RS01625

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Per-strain Table

Position Strand Gene LocusTag Fraction Pimelic (C)
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368,186 + RR42_RS01615 0.47 -1.8
368,365 + RR42_RS01615 0.58 +0.4
368,365 + RR42_RS01615 0.58 -0.6
368,792 + RR42_RS01615 0.86 +0.5
368,847 - RR42_RS01615 0.89 +0.1
369,106 + -0.5
369,106 + -0.8
369,107 - -1.0
369,107 - -0.1
369,123 - +0.5
369,187 + RR42_RS01620 0.17 -0.4
369,188 - RR42_RS01620 0.18 -0.5
369,248 + RR42_RS01620 0.27 -0.8
369,464 + RR42_RS01620 0.59 +0.4
369,619 - RR42_RS01620 0.82 -0.2
369,630 - RR42_RS01620 0.84 +0.3
369,643 - RR42_RS01620 0.86 +0.6
369,676 - +0.9
369,812 + -2.1
369,817 + -2.0
369,817 + -0.3
369,817 + +0.3
369,817 + -0.1
369,817 + -1.2
369,909 + +0.3
369,909 + +0.3
369,911 + +0.6
369,912 - +1.2
369,912 - -0.3
370,083 + +0.8
370,084 - -0.9
370,084 - +0.3
370,084 - -0.5
370,084 - -0.1
370,198 - RR42_RS01625 0.11 +0.9
370,249 - RR42_RS01625 0.14 -0.3
370,249 - RR42_RS01625 0.14 +0.3
370,278 + RR42_RS01625 0.15 -0.6
370,278 + RR42_RS01625 0.15 +0.3
370,278 + RR42_RS01625 0.15 -0.6
370,279 - RR42_RS01625 0.15 +0.4
370,279 - RR42_RS01625 0.15 -0.1
370,364 - RR42_RS01625 0.20 +1.1
370,398 + RR42_RS01625 0.21 +0.4
370,425 + RR42_RS01625 0.23 +0.7
370,501 - RR42_RS01625 0.27 -1.4
370,554 + RR42_RS01625 0.29 -0.1
370,674 + RR42_RS01625 0.35 -3.1
370,675 - RR42_RS01625 0.36 +0.9
370,675 - RR42_RS01625 0.36 -0.3

Or see this region's nucleotide sequence