Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS12305

Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS12295 and BWI76_RS12300 are separated by 22 nucleotidesBWI76_RS12300 and BWI76_RS12305 are separated by 38 nucleotidesBWI76_RS12305 and BWI76_RS12310 are separated by 137 nucleotidesBWI76_RS12310 and BWI76_RS12315 are separated by 507 nucleotides BWI76_RS12295: BWI76_RS12295 - hypothetical protein, at 2,567,206 to 2,567,598 _RS12295 BWI76_RS12300: BWI76_RS12300 - hypothetical protein, at 2,567,621 to 2,568,553 _RS12300 BWI76_RS12305: BWI76_RS12305 - hypothetical protein, at 2,568,592 to 2,569,074 _RS12305 BWI76_RS12310: BWI76_RS12310 - hypothetical protein, at 2,569,212 to 2,569,427 _RS12310 BWI76_RS12315: BWI76_RS12315 - hypothetical protein, at 2,569,935 to 2,570,459 _RS12315 Position (kb) 2568 2569 2570Strain fitness (log2 ratio) -2 -1 0 1at 2567.674 kb on - strandat 2567.724 kb on + strand, within BWI76_RS12300at 2567.724 kb on + strand, within BWI76_RS12300at 2567.732 kb on - strand, within BWI76_RS12300at 2567.788 kb on - strand, within BWI76_RS12300at 2567.953 kb on + strand, within BWI76_RS12300at 2568.147 kb on + strand, within BWI76_RS12300at 2568.147 kb on - strand, within BWI76_RS12300at 2568.162 kb on + strand, within BWI76_RS12300at 2568.271 kb on + strand, within BWI76_RS12300at 2568.305 kb on + strand, within BWI76_RS12300at 2568.381 kb on + strand, within BWI76_RS12300at 2568.496 kb on + strandat 2568.496 kb on + strandat 2568.504 kb on - strandat 2568.553 kb on + strandat 2568.793 kb on + strand, within BWI76_RS12305at 2568.816 kb on + strand, within BWI76_RS12305at 2568.905 kb on + strand, within BWI76_RS12305at 2568.926 kb on + strand, within BWI76_RS12305at 2568.937 kb on + strand, within BWI76_RS12305at 2569.001 kb on - strand, within BWI76_RS12305at 2569.032 kb on + strandat 2569.040 kb on - strandat 2569.087 kb on + strandat 2569.432 kb on + strandat 2569.459 kb on + strandat 2569.459 kb on + strandat 2569.467 kb on - strandat 2569.467 kb on - strandat 2569.467 kb on - strandat 2569.485 kb on + strandat 2569.485 kb on - strandat 2569.490 kb on + strandat 2569.490 kb on + strandat 2569.490 kb on + strandat 2569.498 kb on - strandat 2569.498 kb on - strandat 2569.733 kb on + strandat 2569.742 kb on - strandat 2569.760 kb on + strandat 2569.778 kb on + strandat 2569.868 kb on + strandat 2569.931 kb on + strandat 2569.937 kb on + strandat 2569.937 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
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2,567,674 - -0.3
2,567,724 + BWI76_RS12300 0.11 -0.4
2,567,724 + BWI76_RS12300 0.11 -0.3
2,567,732 - BWI76_RS12300 0.12 -0.8
2,567,788 - BWI76_RS12300 0.18 -0.8
2,567,953 + BWI76_RS12300 0.36 -0.8
2,568,147 + BWI76_RS12300 0.56 -1.3
2,568,147 - BWI76_RS12300 0.56 -1.8
2,568,162 + BWI76_RS12300 0.58 -1.3
2,568,271 + BWI76_RS12300 0.70 +0.3
2,568,305 + BWI76_RS12300 0.73 -0.3
2,568,381 + BWI76_RS12300 0.81 -0.2
2,568,496 + -0.2
2,568,496 + -1.1
2,568,504 - -0.6
2,568,553 + -0.1
2,568,793 + BWI76_RS12305 0.42 -1.4
2,568,816 + BWI76_RS12305 0.46 -0.9
2,568,905 + BWI76_RS12305 0.65 +0.2
2,568,926 + BWI76_RS12305 0.69 -1.8
2,568,937 + BWI76_RS12305 0.71 -0.4
2,569,001 - BWI76_RS12305 0.85 -1.4
2,569,032 + -1.0
2,569,040 - -0.4
2,569,087 + -0.3
2,569,432 + -0.2
2,569,459 + -0.4
2,569,459 + -1.6
2,569,467 - -0.2
2,569,467 - -0.9
2,569,467 - -0.5
2,569,485 + -0.5
2,569,485 - +0.3
2,569,490 + -0.5
2,569,490 + -0.6
2,569,490 + +0.2
2,569,498 - -0.2
2,569,498 - -0.1
2,569,733 + +0.4
2,569,742 - -1.1
2,569,760 + +1.3
2,569,778 + +0.4
2,569,868 + -0.4
2,569,931 + -0.3
2,569,937 + -2.2
2,569,937 + +0.9

Or see this region's nucleotide sequence