Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS03155 and BWI76_RS03160 are separated by 463 nucleotides BWI76_RS03160 and BWI76_RS03165 are separated by 768 nucleotides
BWI76_RS03155: BWI76_RS03155 - hypothetical protein, at 650,064 to 650,966
_RS03155
BWI76_RS03160: BWI76_RS03160 - hypothetical protein, at 651,430 to 653,463
_RS03160
BWI76_RS03165: BWI76_RS03165 - phage polarity suppression protein, at 654,232 to 654,798
_RS03165
Position (kb) 651
652
653
654 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 650.541 kb on + strand at 650.541 kb on + strand, within BWI76_RS03155 at 650.542 kb on + strand, within BWI76_RS03155 at 650.542 kb on + strand, within BWI76_RS03155 at 650.549 kb on - strand, within BWI76_RS03155 at 650.550 kb on - strand, within BWI76_RS03155 at 650.550 kb on - strand, within BWI76_RS03155 at 650.557 kb on + strand, within BWI76_RS03155 at 650.560 kb on - strand, within BWI76_RS03155 at 650.565 kb on - strand, within BWI76_RS03155 at 650.807 kb on - strand, within BWI76_RS03155 at 650.807 kb on - strand, within BWI76_RS03155 at 650.877 kb on + strand at 650.939 kb on + strand at 650.946 kb on - strand at 651.045 kb on - strand at 651.088 kb on + strand at 651.088 kb on + strand at 651.088 kb on + strand at 651.096 kb on - strand at 651.135 kb on + strand at 651.135 kb on + strand at 651.135 kb on + strand at 651.143 kb on - strand at 651.143 kb on - strand at 651.143 kb on - strand at 651.143 kb on - strand at 651.181 kb on + strand at 651.181 kb on + strand at 651.181 kb on + strand at 651.189 kb on - strand at 651.189 kb on - strand at 651.189 kb on - strand at 651.189 kb on - strand at 651.193 kb on + strand at 651.201 kb on - strand at 651.215 kb on + strand at 651.215 kb on + strand at 651.215 kb on + strand at 651.278 kb on + strand at 651.287 kb on - strand at 651.292 kb on + strand at 651.300 kb on + strand at 651.300 kb on - strand at 651.300 kb on - strand at 651.319 kb on + strand at 651.415 kb on + strand at 651.438 kb on + strand at 651.446 kb on - strand at 651.446 kb on - strand at 651.483 kb on + strand at 651.484 kb on - strand at 651.491 kb on + strand at 651.498 kb on + strand at 651.552 kb on + strand at 651.552 kb on + strand at 651.552 kb on + strand at 651.552 kb on + strand at 651.552 kb on + strand at 651.552 kb on + strand at 651.552 kb on + strand at 651.560 kb on - strand at 651.560 kb on - strand at 651.560 kb on - strand at 651.560 kb on - strand at 651.560 kb on - strand at 651.560 kb on - strand at 651.610 kb on + strand at 651.755 kb on - strand, within BWI76_RS03160 at 651.844 kb on + strand, within BWI76_RS03160 at 651.845 kb on + strand, within BWI76_RS03160 at 651.845 kb on + strand, within BWI76_RS03160 at 651.845 kb on + strand, within BWI76_RS03160 at 651.845 kb on + strand, within BWI76_RS03160 at 651.845 kb on + strand, within BWI76_RS03160 at 651.845 kb on + strand, within BWI76_RS03160 at 651.845 kb on + strand, within BWI76_RS03160 at 651.845 kb on + strand, within BWI76_RS03160 at 651.845 kb on + strand, within BWI76_RS03160 at 651.845 kb on + strand, within BWI76_RS03160 at 651.845 kb on + strand, within BWI76_RS03160 at 651.853 kb on - strand, within BWI76_RS03160 at 651.853 kb on - strand, within BWI76_RS03160 at 651.853 kb on - strand, within BWI76_RS03160 at 651.853 kb on - strand, within BWI76_RS03160 at 651.853 kb on - strand, within BWI76_RS03160 at 651.853 kb on - strand, within BWI76_RS03160 at 651.855 kb on + strand, within BWI76_RS03160 at 651.855 kb on + strand, within BWI76_RS03160 at 651.863 kb on - strand, within BWI76_RS03160 at 651.969 kb on + strand, within BWI76_RS03160 at 651.984 kb on + strand, within BWI76_RS03160 at 651.984 kb on + strand, within BWI76_RS03160 at 651.987 kb on - strand, within BWI76_RS03160 at 651.992 kb on - strand, within BWI76_RS03160 at 651.998 kb on + strand, within BWI76_RS03160 at 652.060 kb on - strand, within BWI76_RS03160 at 652.070 kb on - strand, within BWI76_RS03160 at 652.070 kb on - strand, within BWI76_RS03160 at 652.073 kb on + strand, within BWI76_RS03160 at 652.073 kb on + strand, within BWI76_RS03160 at 652.073 kb on + strand, within BWI76_RS03160 at 652.073 kb on + strand, within BWI76_RS03160 at 652.081 kb on - strand, within BWI76_RS03160 at 652.081 kb on - strand, within BWI76_RS03160 at 652.233 kb on + strand, within BWI76_RS03160 at 652.386 kb on - strand, within BWI76_RS03160 at 652.559 kb on - strand at 652.671 kb on - strand, within BWI76_RS03160 at 652.765 kb on - strand, within BWI76_RS03160 at 652.776 kb on - strand, within BWI76_RS03160 at 652.786 kb on - strand, within BWI76_RS03160 at 652.788 kb on - strand, within BWI76_RS03160 at 652.800 kb on + strand, within BWI76_RS03160 at 652.822 kb on + strand, within BWI76_RS03160 at 652.844 kb on + strand, within BWI76_RS03160 at 652.868 kb on + strand, within BWI76_RS03160 at 652.868 kb on + strand, within BWI76_RS03160 at 652.869 kb on + strand, within BWI76_RS03160 at 652.885 kb on + strand, within BWI76_RS03160 at 652.893 kb on + strand, within BWI76_RS03160 at 652.893 kb on - strand, within BWI76_RS03160 at 652.895 kb on + strand, within BWI76_RS03160 at 652.931 kb on + strand, within BWI76_RS03160 at 652.983 kb on + strand, within BWI76_RS03160 at 652.983 kb on + strand, within BWI76_RS03160 at 653.122 kb on + strand, within BWI76_RS03160 at 653.131 kb on + strand, within BWI76_RS03160 at 653.146 kb on + strand, within BWI76_RS03160 at 653.148 kb on + strand, within BWI76_RS03160 at 653.154 kb on - strand, within BWI76_RS03160 at 653.265 kb on + strand at 653.276 kb on + strand at 653.403 kb on + strand at 653.456 kb on + strand at 653.456 kb on + strand at 653.509 kb on - strand at 653.509 kb on - strand at 653.621 kb on + strand at 653.621 kb on + strand at 653.621 kb on + strand at 653.621 kb on + strand at 653.621 kb on + strand at 653.621 kb on + strand at 653.621 kb on + strand at 653.626 kb on + strand at 653.626 kb on + strand at 653.626 kb on + strand at 653.626 kb on + strand at 653.626 kb on + strand at 653.626 kb on + strand at 653.626 kb on + strand at 653.626 kb on + strand at 653.629 kb on - strand at 653.629 kb on - strand at 653.659 kb on + strand at 653.664 kb on + strand at 653.667 kb on + strand at 653.667 kb on + strand at 653.674 kb on + strand at 653.674 kb on + strand at 653.682 kb on - strand at 653.735 kb on - strand at 653.736 kb on + strand at 653.736 kb on + strand at 653.736 kb on + strand at 653.736 kb on + strand at 653.736 kb on + strand at 653.736 kb on + strand at 653.736 kb on + strand at 653.744 kb on - strand at 653.744 kb on - strand at 653.744 kb on - strand at 653.744 kb on - strand at 653.744 kb on - strand at 653.744 kb on - strand at 653.744 kb on - strand at 653.749 kb on - strand at 653.770 kb on + strand at 653.770 kb on + strand at 653.778 kb on + strand at 653.782 kb on + strand at 653.782 kb on + strand at 653.782 kb on + strand at 653.782 kb on + strand at 653.782 kb on + strand at 653.782 kb on + strand at 653.782 kb on + strand at 653.782 kb on + strand at 653.783 kb on + strand at 653.783 kb on + strand at 653.783 kb on + strand at 653.788 kb on + strand at 653.788 kb on + strand at 653.790 kb on - strand at 653.790 kb on - strand at 653.790 kb on - strand at 653.790 kb on - strand at 653.790 kb on - strand at 653.790 kb on - strand at 653.790 kb on - strand at 653.790 kb on - strand at 653.790 kb on - strand at 653.790 kb on - strand at 653.790 kb on - strand at 653.791 kb on - strand at 653.791 kb on - strand at 653.792 kb on + strand at 653.793 kb on + strand at 653.793 kb on + strand at 653.793 kb on + strand at 653.793 kb on + strand at 653.793 kb on + strand at 653.793 kb on + strand at 653.793 kb on + strand at 653.793 kb on + strand at 653.796 kb on - strand at 653.796 kb on - strand at 653.798 kb on + strand at 653.801 kb on - strand at 653.801 kb on - strand at 653.808 kb on - strand at 653.871 kb on + strand at 653.878 kb on + strand at 653.878 kb on + strand at 653.878 kb on - strand at 653.881 kb on + strand at 653.889 kb on - strand at 653.889 kb on - strand at 653.892 kb on + strand at 653.892 kb on + strand at 653.892 kb on + strand at 653.892 kb on + strand at 653.900 kb on - strand at 653.900 kb on - strand at 653.900 kb on - strand at 653.900 kb on - strand at 653.900 kb on - strand at 653.900 kb on - strand at 653.900 kb on - strand at 653.905 kb on - strand at 653.907 kb on + strand at 653.907 kb on + strand at 653.914 kb on + strand at 653.915 kb on - strand at 653.915 kb on - strand at 653.915 kb on - strand at 653.922 kb on - strand at 653.923 kb on + strand at 653.925 kb on + strand at 653.925 kb on + strand at 653.925 kb on + strand at 653.925 kb on + strand at 653.925 kb on + strand at 653.925 kb on + strand at 653.925 kb on + strand at 653.925 kb on + strand at 653.925 kb on + strand at 653.925 kb on + strand at 653.925 kb on + strand at 653.933 kb on - strand at 653.933 kb on - strand at 653.933 kb on - strand at 653.933 kb on - strand at 653.933 kb on - strand at 653.933 kb on - strand at 653.933 kb on - strand at 653.933 kb on - strand at 653.933 kb on - strand at 653.933 kb on - strand at 653.933 kb on - strand at 653.933 kb on - strand at 653.933 kb on - strand at 653.933 kb on - strand at 653.943 kb on - strand at 653.943 kb on - strand at 653.943 kb on - strand at 653.943 kb on - strand at 653.946 kb on - strand at 653.948 kb on - strand at 653.948 kb on - strand at 653.956 kb on - strand at 653.972 kb on - strand at 653.977 kb on - strand at 653.982 kb on - strand at 653.982 kb on - strand at 653.982 kb on - strand at 653.982 kb on - strand at 654.249 kb on - strand at 654.249 kb on - strand at 654.321 kb on + strand, within BWI76_RS03165 at 654.416 kb on - strand, within BWI76_RS03165 at 654.420 kb on + strand, within BWI76_RS03165 at 654.436 kb on + strand, within BWI76_RS03165
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x remove 650,541 + -1.1 650,541 + BWI76_RS03155 0.53 -1.8 650,542 + BWI76_RS03155 0.53 -0.9 650,542 + BWI76_RS03155 0.53 -0.9 650,549 - BWI76_RS03155 0.54 +1.8 650,550 - BWI76_RS03155 0.54 -0.8 650,550 - BWI76_RS03155 0.54 -2.7 650,557 + BWI76_RS03155 0.55 -1.9 650,560 - BWI76_RS03155 0.55 -0.4 650,565 - BWI76_RS03155 0.55 -1.6 650,807 - BWI76_RS03155 0.82 +0.8 650,807 - BWI76_RS03155 0.82 -3.8 650,877 + -2.1 650,939 + -1.0 650,946 - -3.3 651,045 - -0.1 651,088 + -0.2 651,088 + -2.1 651,088 + -0.8 651,096 - -1.5 651,135 + -0.4 651,135 + +0.2 651,135 + -0.4 651,143 - -0.4 651,143 - -2.1 651,143 - -1.0 651,143 - -0.0 651,181 + -0.6 651,181 + +1.2 651,181 + -1.4 651,189 - +0.5 651,189 - -0.3 651,189 - -1.1 651,189 - +0.2 651,193 + -0.1 651,201 - -0.4 651,215 + -0.9 651,215 + -2.5 651,215 + -2.1 651,278 + -0.2 651,287 - -2.4 651,292 + +0.2 651,300 + -1.1 651,300 - -2.4 651,300 - -3.3 651,319 + -1.9 651,415 + -0.9 651,438 + -1.4 651,446 - -1.2 651,446 - -2.1 651,483 + -0.5 651,484 - -1.1 651,491 + -0.4 651,498 + +1.5 651,552 + -2.1 651,552 + +0.7 651,552 + -1.1 651,552 + -0.4 651,552 + -4.0 651,552 + -1.3 651,552 + -1.4 651,560 - -0.6 651,560 - -2.0 651,560 - +0.2 651,560 - +1.2 651,560 - -2.9 651,560 - +0.6 651,610 + -1.9 651,755 - BWI76_RS03160 0.16 -2.9 651,844 + BWI76_RS03160 0.20 -2.7 651,845 + BWI76_RS03160 0.20 -3.2 651,845 + BWI76_RS03160 0.20 +1.2 651,845 + BWI76_RS03160 0.20 -1.3 651,845 + BWI76_RS03160 0.20 -1.7 651,845 + BWI76_RS03160 0.20 -0.4 651,845 + BWI76_RS03160 0.20 +0.6 651,845 + BWI76_RS03160 0.20 -1.5 651,845 + BWI76_RS03160 0.20 -0.4 651,845 + BWI76_RS03160 0.20 -0.8 651,845 + BWI76_RS03160 0.20 -0.1 651,845 + BWI76_RS03160 0.20 -2.6 651,853 - BWI76_RS03160 0.21 -0.7 651,853 - BWI76_RS03160 0.21 -2.4 651,853 - BWI76_RS03160 0.21 -2.4 651,853 - BWI76_RS03160 0.21 +0.0 651,853 - BWI76_RS03160 0.21 -0.3 651,853 - BWI76_RS03160 0.21 -0.6 651,855 + BWI76_RS03160 0.21 +0.8 651,855 + BWI76_RS03160 0.21 -0.6 651,863 - BWI76_RS03160 0.21 -0.1 651,969 + BWI76_RS03160 0.26 -0.4 651,984 + BWI76_RS03160 0.27 -2.4 651,984 + BWI76_RS03160 0.27 -1.6 651,987 - BWI76_RS03160 0.27 -0.4 651,992 - BWI76_RS03160 0.28 +0.9 651,998 + BWI76_RS03160 0.28 -0.8 652,060 - BWI76_RS03160 0.31 -2.1 652,070 - BWI76_RS03160 0.31 -1.3 652,070 - BWI76_RS03160 0.31 -2.7 652,073 + BWI76_RS03160 0.32 -1.8 652,073 + BWI76_RS03160 0.32 -1.5 652,073 + BWI76_RS03160 0.32 -0.9 652,073 + BWI76_RS03160 0.32 -1.1 652,081 - BWI76_RS03160 0.32 -0.4 652,081 - BWI76_RS03160 0.32 -2.6 652,233 + BWI76_RS03160 0.39 -2.0 652,386 - BWI76_RS03160 0.47 -1.9 652,559 - +1.5 652,671 - BWI76_RS03160 0.61 -2.2 652,765 - BWI76_RS03160 0.66 -0.8 652,776 - BWI76_RS03160 0.66 -1.4 652,786 - BWI76_RS03160 0.67 -1.9 652,788 - BWI76_RS03160 0.67 -2.3 652,800 + BWI76_RS03160 0.67 +0.5 652,822 + BWI76_RS03160 0.68 -1.7 652,844 + BWI76_RS03160 0.70 -1.1 652,868 + BWI76_RS03160 0.71 -2.5 652,868 + BWI76_RS03160 0.71 -1.6 652,869 + BWI76_RS03160 0.71 -3.2 652,885 + BWI76_RS03160 0.72 +0.9 652,893 + BWI76_RS03160 0.72 -3.0 652,893 - BWI76_RS03160 0.72 -0.7 652,895 + BWI76_RS03160 0.72 -0.8 652,931 + BWI76_RS03160 0.74 -1.0 652,983 + BWI76_RS03160 0.76 -0.8 652,983 + BWI76_RS03160 0.76 -1.6 653,122 + BWI76_RS03160 0.83 -0.4 653,131 + BWI76_RS03160 0.84 -2.1 653,146 + BWI76_RS03160 0.84 -0.2 653,148 + BWI76_RS03160 0.84 -0.3 653,154 - BWI76_RS03160 0.85 +0.9 653,265 + -0.8 653,276 + -0.8 653,403 + -2.0 653,456 + -2.0 653,456 + +0.7 653,509 - -0.2 653,509 - +1.4 653,621 + +0.4 653,621 + -0.6 653,621 + -0.8 653,621 + -0.8 653,621 + +0.6 653,621 + -0.4 653,621 + -2.4 653,626 + +0.9 653,626 + +1.5 653,626 + +0.2 653,626 + -0.2 653,626 + +0.6 653,626 + +0.1 653,626 + -0.0 653,626 + -0.2 653,629 - -0.1 653,629 - +0.4 653,659 + -0.8 653,664 + +0.6 653,667 + +1.9 653,667 + -0.7 653,674 + -0.2 653,674 + -0.1 653,682 - -0.2 653,735 - +0.2 653,736 + -0.8 653,736 + -1.0 653,736 + +0.1 653,736 + +0.1 653,736 + +0.2 653,736 + -0.0 653,736 + +0.8 653,744 - +0.7 653,744 - -0.3 653,744 - +0.2 653,744 - -0.3 653,744 - -0.5 653,744 - -0.3 653,744 - -0.1 653,749 - -0.2 653,770 + +0.4 653,770 + +0.7 653,778 + +0.4 653,782 + +0.2 653,782 + -0.9 653,782 + +0.2 653,782 + +1.6 653,782 + +0.6 653,782 + +0.6 653,782 + -0.4 653,782 + +0.3 653,783 + +0.2 653,783 + -0.2 653,783 + +0.4 653,788 + +0.3 653,788 + -0.4 653,790 - +0.6 653,790 - -0.4 653,790 - -0.7 653,790 - +0.5 653,790 - +0.5 653,790 - +0.8 653,790 - -0.0 653,790 - +1.3 653,790 - -0.1 653,790 - -0.1 653,790 - -0.2 653,791 - +1.2 653,791 - +0.0 653,792 + +0.7 653,793 + -1.1 653,793 + +0.3 653,793 + +0.3 653,793 + -2.6 653,793 + +0.4 653,793 + +0.2 653,793 + -0.2 653,793 + -2.3 653,796 - +0.6 653,796 - -0.4 653,798 + +0.4 653,801 - +1.2 653,801 - +0.5 653,808 - +0.5 653,871 + -0.1 653,878 + -0.7 653,878 + +0.0 653,878 - +0.2 653,881 + +0.7 653,889 - -0.2 653,889 - +0.1 653,892 + +0.9 653,892 + +0.4 653,892 + +0.1 653,892 + -1.6 653,900 - +0.7 653,900 - +0.7 653,900 - +0.9 653,900 - +0.2 653,900 - +0.5 653,900 - -0.1 653,900 - +0.0 653,905 - +0.5 653,907 + -2.3 653,907 + +0.5 653,914 + -0.1 653,915 - +0.2 653,915 - -0.1 653,915 - -0.1 653,922 - +1.3 653,923 + +0.1 653,925 + -1.2 653,925 + +0.4 653,925 + -0.7 653,925 + -1.2 653,925 + -0.9 653,925 + +0.5 653,925 + +0.2 653,925 + +0.3 653,925 + -1.9 653,925 + +0.1 653,925 + +1.2 653,933 - -0.8 653,933 - +0.7 653,933 - -0.5 653,933 - -0.4 653,933 - -0.0 653,933 - +1.2 653,933 - -0.2 653,933 - +0.0 653,933 - -0.4 653,933 - +0.1 653,933 - +0.3 653,933 - -0.3 653,933 - +0.3 653,933 - +0.1 653,943 - +0.1 653,943 - -0.9 653,943 - -0.7 653,943 - -0.1 653,946 - +1.2 653,948 - -0.2 653,948 - +1.1 653,956 - +0.9 653,972 - +0.3 653,977 - +0.7 653,982 - +0.4 653,982 - -0.0 653,982 - +0.4 653,982 - -0.9 654,249 - +0.8 654,249 - +0.3 654,321 + BWI76_RS03165 0.16 -0.0 654,416 - BWI76_RS03165 0.32 -0.3 654,420 + BWI76_RS03165 0.33 -2.0 654,436 + BWI76_RS03165 0.36 +0.2
Or see this region's nucleotide sequence