Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS03150 and BWI76_RS03155 are separated by 126 nucleotides BWI76_RS03155 and BWI76_RS03160 are separated by 463 nucleotides
BWI76_RS03150: BWI76_RS03150 - site-specific recombinase, phage integrase family protein, at 648,675 to 649,937
_RS03150
BWI76_RS03155: BWI76_RS03155 - hypothetical protein, at 650,064 to 650,966
_RS03155
BWI76_RS03160: BWI76_RS03160 - hypothetical protein, at 651,430 to 653,463
_RS03160
Position (kb) 650
651 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 649.097 kb on + strand, within BWI76_RS03150 at 649.097 kb on + strand, within BWI76_RS03150 at 649.097 kb on + strand, within BWI76_RS03150 at 649.112 kb on + strand, within BWI76_RS03150 at 649.151 kb on + strand, within BWI76_RS03150 at 649.159 kb on - strand, within BWI76_RS03150 at 649.206 kb on + strand, within BWI76_RS03150 at 649.214 kb on - strand, within BWI76_RS03150 at 649.225 kb on + strand, within BWI76_RS03150 at 649.225 kb on + strand, within BWI76_RS03150 at 649.233 kb on - strand, within BWI76_RS03150 at 649.233 kb on - strand, within BWI76_RS03150 at 649.248 kb on - strand, within BWI76_RS03150 at 649.277 kb on + strand, within BWI76_RS03150 at 649.287 kb on + strand, within BWI76_RS03150 at 649.295 kb on - strand, within BWI76_RS03150 at 649.329 kb on + strand, within BWI76_RS03150 at 649.363 kb on + strand, within BWI76_RS03150 at 649.371 kb on - strand, within BWI76_RS03150 at 649.489 kb on - strand, within BWI76_RS03150 at 649.500 kb on - strand, within BWI76_RS03150 at 649.500 kb on - strand, within BWI76_RS03150 at 649.519 kb on - strand, within BWI76_RS03150 at 649.523 kb on + strand, within BWI76_RS03150 at 649.577 kb on + strand, within BWI76_RS03150 at 649.585 kb on - strand, within BWI76_RS03150 at 649.585 kb on - strand, within BWI76_RS03150 at 649.619 kb on - strand, within BWI76_RS03150 at 649.691 kb on + strand, within BWI76_RS03150 at 649.704 kb on + strand, within BWI76_RS03150 at 649.706 kb on + strand, within BWI76_RS03150 at 649.706 kb on + strand, within BWI76_RS03150 at 649.711 kb on + strand, within BWI76_RS03150 at 649.714 kb on - strand, within BWI76_RS03150 at 649.714 kb on - strand, within BWI76_RS03150 at 649.723 kb on + strand, within BWI76_RS03150 at 649.743 kb on + strand, within BWI76_RS03150 at 649.743 kb on + strand, within BWI76_RS03150 at 649.743 kb on + strand, within BWI76_RS03150 at 649.746 kb on - strand, within BWI76_RS03150 at 649.748 kb on + strand, within BWI76_RS03150 at 649.751 kb on - strand, within BWI76_RS03150 at 649.751 kb on - strand, within BWI76_RS03150 at 649.751 kb on - strand at 649.783 kb on + strand, within BWI76_RS03150 at 649.783 kb on + strand, within BWI76_RS03150 at 649.798 kb on - strand, within BWI76_RS03150 at 649.853 kb on - strand at 649.854 kb on + strand at 649.854 kb on + strand at 649.854 kb on + strand at 649.854 kb on + strand at 649.854 kb on + strand at 649.854 kb on + strand at 649.854 kb on + strand at 649.854 kb on + strand at 649.854 kb on + strand at 649.854 kb on + strand at 649.854 kb on + strand at 649.854 kb on + strand at 649.854 kb on + strand at 649.855 kb on - strand at 649.855 kb on - strand at 649.862 kb on - strand at 649.862 kb on - strand at 649.862 kb on - strand at 649.862 kb on - strand at 649.862 kb on - strand at 649.862 kb on - strand at 649.862 kb on - strand at 649.862 kb on - strand at 649.862 kb on - strand at 649.862 kb on - strand at 649.862 kb on - strand at 649.867 kb on - strand at 649.867 kb on - strand at 649.867 kb on - strand at 649.873 kb on + strand at 649.881 kb on - strand at 649.888 kb on + strand at 649.903 kb on - strand at 649.905 kb on + strand at 649.905 kb on + strand at 649.905 kb on + strand at 649.905 kb on - strand at 649.905 kb on - strand at 649.906 kb on - strand at 649.906 kb on - strand at 649.913 kb on - strand at 649.913 kb on - strand at 649.913 kb on - strand at 649.913 kb on - strand at 649.913 kb on - strand at 649.973 kb on + strand at 649.973 kb on + strand at 649.973 kb on + strand at 649.983 kb on + strand at 649.983 kb on + strand at 649.991 kb on - strand at 650.061 kb on - strand at 650.117 kb on - strand at 650.121 kb on + strand at 650.132 kb on + strand at 650.132 kb on + strand at 650.140 kb on - strand at 650.163 kb on + strand, within BWI76_RS03155 at 650.190 kb on + strand at 650.190 kb on + strand, within BWI76_RS03155 at 650.190 kb on + strand at 650.194 kb on + strand, within BWI76_RS03155 at 650.198 kb on + strand, within BWI76_RS03155 at 650.198 kb on + strand, within BWI76_RS03155 at 650.198 kb on - strand, within BWI76_RS03155 at 650.200 kb on + strand, within BWI76_RS03155 at 650.208 kb on - strand, within BWI76_RS03155 at 650.209 kb on - strand, within BWI76_RS03155 at 650.213 kb on + strand, within BWI76_RS03155 at 650.213 kb on + strand, within BWI76_RS03155 at 650.213 kb on + strand, within BWI76_RS03155 at 650.215 kb on + strand, within BWI76_RS03155 at 650.215 kb on + strand, within BWI76_RS03155 at 650.215 kb on + strand, within BWI76_RS03155 at 650.221 kb on + strand, within BWI76_RS03155 at 650.221 kb on - strand, within BWI76_RS03155 at 650.221 kb on - strand, within BWI76_RS03155 at 650.221 kb on - strand, within BWI76_RS03155 at 650.221 kb on - strand, within BWI76_RS03155 at 650.223 kb on - strand, within BWI76_RS03155 at 650.228 kb on + strand, within BWI76_RS03155 at 650.236 kb on + strand, within BWI76_RS03155 at 650.236 kb on + strand, within BWI76_RS03155 at 650.236 kb on + strand, within BWI76_RS03155 at 650.236 kb on + strand, within BWI76_RS03155 at 650.236 kb on + strand, within BWI76_RS03155 at 650.244 kb on - strand, within BWI76_RS03155 at 650.244 kb on - strand, within BWI76_RS03155 at 650.244 kb on - strand, within BWI76_RS03155 at 650.244 kb on - strand, within BWI76_RS03155 at 650.244 kb on - strand, within BWI76_RS03155 at 650.246 kb on + strand, within BWI76_RS03155 at 650.246 kb on + strand at 650.246 kb on + strand, within BWI76_RS03155 at 650.246 kb on + strand, within BWI76_RS03155 at 650.246 kb on + strand, within BWI76_RS03155 at 650.246 kb on + strand, within BWI76_RS03155 at 650.246 kb on + strand, within BWI76_RS03155 at 650.246 kb on + strand, within BWI76_RS03155 at 650.249 kb on - strand, within BWI76_RS03155 at 650.254 kb on - strand, within BWI76_RS03155 at 650.254 kb on - strand, within BWI76_RS03155 at 650.254 kb on - strand, within BWI76_RS03155 at 650.254 kb on - strand, within BWI76_RS03155 at 650.254 kb on - strand, within BWI76_RS03155 at 650.254 kb on - strand, within BWI76_RS03155 at 650.254 kb on - strand, within BWI76_RS03155 at 650.254 kb on - strand, within BWI76_RS03155 at 650.254 kb on - strand, within BWI76_RS03155 at 650.259 kb on + strand, within BWI76_RS03155 at 650.262 kb on - strand, within BWI76_RS03155 at 650.264 kb on - strand, within BWI76_RS03155 at 650.289 kb on - strand, within BWI76_RS03155 at 650.289 kb on - strand, within BWI76_RS03155 at 650.541 kb on + strand at 650.541 kb on + strand, within BWI76_RS03155 at 650.542 kb on + strand, within BWI76_RS03155 at 650.542 kb on + strand, within BWI76_RS03155 at 650.549 kb on - strand, within BWI76_RS03155 at 650.550 kb on - strand, within BWI76_RS03155 at 650.550 kb on - strand, within BWI76_RS03155 at 650.557 kb on + strand, within BWI76_RS03155 at 650.560 kb on - strand, within BWI76_RS03155 at 650.565 kb on - strand, within BWI76_RS03155 at 650.807 kb on - strand, within BWI76_RS03155 at 650.807 kb on - strand, within BWI76_RS03155 at 650.877 kb on + strand at 650.939 kb on + strand at 650.946 kb on - strand at 651.045 kb on - strand at 651.088 kb on + strand at 651.088 kb on + strand at 651.088 kb on + strand at 651.096 kb on - strand at 651.135 kb on + strand at 651.135 kb on + strand at 651.135 kb on + strand at 651.143 kb on - strand at 651.143 kb on - strand at 651.143 kb on - strand at 651.143 kb on - strand at 651.181 kb on + strand at 651.181 kb on + strand at 651.181 kb on + strand at 651.189 kb on - strand at 651.189 kb on - strand at 651.189 kb on - strand at 651.189 kb on - strand at 651.193 kb on + strand at 651.201 kb on - strand at 651.215 kb on + strand at 651.215 kb on + strand at 651.215 kb on + strand at 651.278 kb on + strand at 651.287 kb on - strand at 651.292 kb on + strand at 651.300 kb on + strand at 651.300 kb on - strand at 651.300 kb on - strand at 651.319 kb on + strand at 651.415 kb on + strand at 651.438 kb on + strand at 651.446 kb on - strand at 651.446 kb on - strand at 651.483 kb on + strand at 651.484 kb on - strand at 651.491 kb on + strand at 651.498 kb on + strand at 651.552 kb on + strand at 651.552 kb on + strand at 651.552 kb on + strand at 651.552 kb on + strand at 651.552 kb on + strand at 651.552 kb on + strand at 651.552 kb on + strand at 651.560 kb on - strand at 651.560 kb on - strand at 651.560 kb on - strand at 651.560 kb on - strand at 651.560 kb on - strand at 651.560 kb on - strand at 651.610 kb on + strand at 651.755 kb on - strand, within BWI76_RS03160 at 651.844 kb on + strand, within BWI76_RS03160 at 651.845 kb on + strand, within BWI76_RS03160 at 651.845 kb on + strand, within BWI76_RS03160 at 651.845 kb on + strand, within BWI76_RS03160 at 651.845 kb on + strand, within BWI76_RS03160 at 651.845 kb on + strand, within BWI76_RS03160 at 651.845 kb on + strand, within BWI76_RS03160 at 651.845 kb on + strand, within BWI76_RS03160 at 651.845 kb on + strand, within BWI76_RS03160 at 651.845 kb on + strand, within BWI76_RS03160 at 651.845 kb on + strand, within BWI76_RS03160 at 651.845 kb on + strand, within BWI76_RS03160 at 651.853 kb on - strand, within BWI76_RS03160 at 651.853 kb on - strand, within BWI76_RS03160 at 651.853 kb on - strand, within BWI76_RS03160 at 651.853 kb on - strand, within BWI76_RS03160 at 651.853 kb on - strand, within BWI76_RS03160 at 651.853 kb on - strand, within BWI76_RS03160 at 651.855 kb on + strand, within BWI76_RS03160 at 651.855 kb on + strand, within BWI76_RS03160 at 651.863 kb on - strand, within BWI76_RS03160
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x remove 649,097 + BWI76_RS03150 0.33 -0.1 649,097 + BWI76_RS03150 0.33 -0.2 649,097 + BWI76_RS03150 0.33 -0.2 649,112 + BWI76_RS03150 0.35 -1.6 649,151 + BWI76_RS03150 0.38 +0.5 649,159 - BWI76_RS03150 0.38 -0.3 649,206 + BWI76_RS03150 0.42 -0.3 649,214 - BWI76_RS03150 0.43 +0.3 649,225 + BWI76_RS03150 0.44 +0.3 649,225 + BWI76_RS03150 0.44 -0.8 649,233 - BWI76_RS03150 0.44 -0.1 649,233 - BWI76_RS03150 0.44 -0.4 649,248 - BWI76_RS03150 0.45 -0.5 649,277 + BWI76_RS03150 0.48 +1.7 649,287 + BWI76_RS03150 0.48 +0.4 649,295 - BWI76_RS03150 0.49 -1.6 649,329 + BWI76_RS03150 0.52 -0.0 649,363 + BWI76_RS03150 0.54 -0.0 649,371 - BWI76_RS03150 0.55 +0.1 649,489 - BWI76_RS03150 0.64 -0.7 649,500 - BWI76_RS03150 0.65 -0.3 649,500 - BWI76_RS03150 0.65 -0.0 649,519 - BWI76_RS03150 0.67 +1.5 649,523 + BWI76_RS03150 0.67 +0.8 649,577 + BWI76_RS03150 0.71 -0.2 649,585 - BWI76_RS03150 0.72 +1.2 649,585 - BWI76_RS03150 0.72 -0.2 649,619 - BWI76_RS03150 0.75 +0.6 649,691 + BWI76_RS03150 0.80 +0.2 649,704 + BWI76_RS03150 0.81 +0.7 649,706 + BWI76_RS03150 0.82 -0.4 649,706 + BWI76_RS03150 0.82 -0.2 649,711 + BWI76_RS03150 0.82 +1.0 649,714 - BWI76_RS03150 0.82 +0.0 649,714 - BWI76_RS03150 0.82 +0.0 649,723 + BWI76_RS03150 0.83 +0.0 649,743 + BWI76_RS03150 0.85 -1.5 649,743 + BWI76_RS03150 0.85 +0.7 649,743 + BWI76_RS03150 0.85 -0.2 649,746 - BWI76_RS03150 0.85 +0.5 649,748 + BWI76_RS03150 0.85 +3.0 649,751 - BWI76_RS03150 0.85 -0.2 649,751 - BWI76_RS03150 0.85 -0.2 649,751 - -0.8 649,783 + BWI76_RS03150 0.88 -1.6 649,783 + BWI76_RS03150 0.88 -0.3 649,798 - BWI76_RS03150 0.89 +0.6 649,853 - +0.2 649,854 + -0.6 649,854 + -0.3 649,854 + +1.3 649,854 + -0.8 649,854 + -0.0 649,854 + -0.3 649,854 + -0.2 649,854 + -0.3 649,854 + -0.4 649,854 + +0.0 649,854 + -0.5 649,854 + +0.4 649,854 + -2.0 649,855 - +0.4 649,855 - +0.2 649,862 - +0.2 649,862 - -0.4 649,862 - -1.5 649,862 - -1.3 649,862 - -0.1 649,862 - +0.2 649,862 - -0.8 649,862 - +0.2 649,862 - -1.6 649,862 - -0.6 649,862 - -0.8 649,867 - +0.5 649,867 - -0.4 649,867 - -0.4 649,873 + +0.1 649,881 - -1.6 649,888 + +0.4 649,903 - +0.4 649,905 + -0.1 649,905 + -0.1 649,905 + -0.4 649,905 - -0.9 649,905 - -0.6 649,906 - +0.2 649,906 - +1.0 649,913 - +1.2 649,913 - -0.1 649,913 - -0.4 649,913 - -0.2 649,913 - -0.0 649,973 + -0.9 649,973 + -0.4 649,973 + -0.8 649,983 + -0.6 649,983 + +0.0 649,991 - +0.9 650,061 - -1.2 650,117 - -2.1 650,121 + -1.9 650,132 + -1.9 650,132 + +0.2 650,140 - -1.5 650,163 + BWI76_RS03155 0.11 -0.5 650,190 + +2.2 650,190 + BWI76_RS03155 0.14 -0.7 650,190 + +2.2 650,194 + BWI76_RS03155 0.14 -1.2 650,198 + BWI76_RS03155 0.15 -1.4 650,198 + BWI76_RS03155 0.15 -0.3 650,198 - BWI76_RS03155 0.15 -0.5 650,200 + BWI76_RS03155 0.15 -0.4 650,208 - BWI76_RS03155 0.16 -0.4 650,209 - BWI76_RS03155 0.16 -1.8 650,213 + BWI76_RS03155 0.17 -2.1 650,213 + BWI76_RS03155 0.17 -0.5 650,213 + BWI76_RS03155 0.17 -2.1 650,215 + BWI76_RS03155 0.17 +0.8 650,215 + BWI76_RS03155 0.17 -0.4 650,215 + BWI76_RS03155 0.17 -1.3 650,221 + BWI76_RS03155 0.17 -2.7 650,221 - BWI76_RS03155 0.17 +0.8 650,221 - BWI76_RS03155 0.17 -0.9 650,221 - BWI76_RS03155 0.17 -0.9 650,221 - BWI76_RS03155 0.17 -1.6 650,223 - BWI76_RS03155 0.18 -0.2 650,228 + BWI76_RS03155 0.18 -0.9 650,236 + BWI76_RS03155 0.19 -0.8 650,236 + BWI76_RS03155 0.19 -1.3 650,236 + BWI76_RS03155 0.19 +0.1 650,236 + BWI76_RS03155 0.19 -0.7 650,236 + BWI76_RS03155 0.19 -1.3 650,244 - BWI76_RS03155 0.20 -0.4 650,244 - BWI76_RS03155 0.20 -0.8 650,244 - BWI76_RS03155 0.20 -1.0 650,244 - BWI76_RS03155 0.20 +0.6 650,244 - BWI76_RS03155 0.20 -3.0 650,246 + BWI76_RS03155 0.20 -0.6 650,246 + -1.6 650,246 + BWI76_RS03155 0.20 -0.4 650,246 + BWI76_RS03155 0.20 -1.3 650,246 + BWI76_RS03155 0.20 -1.5 650,246 + BWI76_RS03155 0.20 -0.6 650,246 + BWI76_RS03155 0.20 +0.2 650,246 + BWI76_RS03155 0.20 +0.5 650,249 - BWI76_RS03155 0.20 -2.6 650,254 - BWI76_RS03155 0.21 +0.1 650,254 - BWI76_RS03155 0.21 -0.9 650,254 - BWI76_RS03155 0.21 -1.7 650,254 - BWI76_RS03155 0.21 -1.3 650,254 - BWI76_RS03155 0.21 +0.2 650,254 - BWI76_RS03155 0.21 -0.6 650,254 - BWI76_RS03155 0.21 -0.5 650,254 - BWI76_RS03155 0.21 -1.0 650,254 - BWI76_RS03155 0.21 -1.6 650,259 + BWI76_RS03155 0.22 -1.8 650,262 - BWI76_RS03155 0.22 -1.4 650,264 - BWI76_RS03155 0.22 -2.8 650,289 - BWI76_RS03155 0.25 -0.6 650,289 - BWI76_RS03155 0.25 -1.4 650,541 + -1.1 650,541 + BWI76_RS03155 0.53 -1.8 650,542 + BWI76_RS03155 0.53 -0.9 650,542 + BWI76_RS03155 0.53 -0.9 650,549 - BWI76_RS03155 0.54 +1.8 650,550 - BWI76_RS03155 0.54 -0.8 650,550 - BWI76_RS03155 0.54 -2.7 650,557 + BWI76_RS03155 0.55 -1.9 650,560 - BWI76_RS03155 0.55 -0.4 650,565 - BWI76_RS03155 0.55 -1.6 650,807 - BWI76_RS03155 0.82 +0.8 650,807 - BWI76_RS03155 0.82 -3.8 650,877 + -2.1 650,939 + -1.0 650,946 - -3.3 651,045 - -0.1 651,088 + -0.2 651,088 + -2.1 651,088 + -0.8 651,096 - -1.5 651,135 + -0.4 651,135 + +0.2 651,135 + -0.4 651,143 - -0.4 651,143 - -2.1 651,143 - -1.0 651,143 - -0.0 651,181 + -0.6 651,181 + +1.2 651,181 + -1.4 651,189 - +0.5 651,189 - -0.3 651,189 - -1.1 651,189 - +0.2 651,193 + -0.1 651,201 - -0.4 651,215 + -0.9 651,215 + -2.5 651,215 + -2.1 651,278 + -0.2 651,287 - -2.4 651,292 + +0.2 651,300 + -1.1 651,300 - -2.4 651,300 - -3.3 651,319 + -1.9 651,415 + -0.9 651,438 + -1.4 651,446 - -1.2 651,446 - -2.1 651,483 + -0.5 651,484 - -1.1 651,491 + -0.4 651,498 + +1.5 651,552 + -2.1 651,552 + +0.7 651,552 + -1.1 651,552 + -0.4 651,552 + -4.0 651,552 + -1.3 651,552 + -1.4 651,560 - -0.6 651,560 - -2.0 651,560 - +0.2 651,560 - +1.2 651,560 - -2.9 651,560 - +0.6 651,610 + -1.9 651,755 - BWI76_RS03160 0.16 -2.9 651,844 + BWI76_RS03160 0.20 -2.7 651,845 + BWI76_RS03160 0.20 -3.2 651,845 + BWI76_RS03160 0.20 +1.2 651,845 + BWI76_RS03160 0.20 -1.3 651,845 + BWI76_RS03160 0.20 -1.7 651,845 + BWI76_RS03160 0.20 -0.4 651,845 + BWI76_RS03160 0.20 +0.6 651,845 + BWI76_RS03160 0.20 -1.5 651,845 + BWI76_RS03160 0.20 -0.4 651,845 + BWI76_RS03160 0.20 -0.8 651,845 + BWI76_RS03160 0.20 -0.1 651,845 + BWI76_RS03160 0.20 -2.6 651,853 - BWI76_RS03160 0.21 -0.7 651,853 - BWI76_RS03160 0.21 -2.4 651,853 - BWI76_RS03160 0.21 -2.4 651,853 - BWI76_RS03160 0.21 +0.0 651,853 - BWI76_RS03160 0.21 -0.3 651,853 - BWI76_RS03160 0.21 -0.6 651,855 + BWI76_RS03160 0.21 +0.8 651,855 + BWI76_RS03160 0.21 -0.6 651,863 - BWI76_RS03160 0.21 -0.1
Or see this region's nucleotide sequence