Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS00255 and BWI76_RS00260 overlap by 4 nucleotides BWI76_RS00260 and BWI76_RS00265 are separated by 218 nucleotides
BWI76_RS00255: BWI76_RS00255 - hypothetical protein, at 51,095 to 52,543
_RS00255
BWI76_RS00260: BWI76_RS00260 - ATPase RavA, at 52,540 to 54,039
_RS00260
BWI76_RS00265: BWI76_RS00265 - potassium transporter Kup, at 54,258 to 56,126
_RS00265
Position (kb) 52
53
54
55 Strain fitness (log2 ratio) -2
-1
0
1
2 at 51.543 kb on - strand, within BWI76_RS00255 at 51.672 kb on + strand, within BWI76_RS00255 at 51.786 kb on - strand, within BWI76_RS00255 at 51.893 kb on - strand, within BWI76_RS00255 at 51.912 kb on + strand, within BWI76_RS00255 at 52.043 kb on - strand, within BWI76_RS00255 at 52.043 kb on - strand, within BWI76_RS00255 at 52.054 kb on + strand, within BWI76_RS00255 at 52.064 kb on + strand, within BWI76_RS00255 at 52.114 kb on + strand, within BWI76_RS00255 at 52.183 kb on + strand, within BWI76_RS00255 at 52.191 kb on - strand, within BWI76_RS00255 at 52.191 kb on - strand, within BWI76_RS00255 at 52.199 kb on - strand, within BWI76_RS00255 at 52.389 kb on - strand, within BWI76_RS00255 at 52.504 kb on - strand at 52.599 kb on + strand at 52.778 kb on + strand, within BWI76_RS00260 at 52.782 kb on + strand, within BWI76_RS00260 at 52.782 kb on + strand, within BWI76_RS00260 at 52.867 kb on - strand, within BWI76_RS00260 at 53.097 kb on - strand, within BWI76_RS00260 at 53.099 kb on - strand, within BWI76_RS00260 at 53.149 kb on - strand, within BWI76_RS00260 at 53.149 kb on - strand, within BWI76_RS00260 at 53.149 kb on - strand at 53.257 kb on - strand, within BWI76_RS00260 at 53.362 kb on + strand, within BWI76_RS00260 at 53.417 kb on - strand, within BWI76_RS00260 at 53.417 kb on - strand, within BWI76_RS00260 at 53.441 kb on + strand, within BWI76_RS00260 at 53.457 kb on - strand, within BWI76_RS00260 at 53.671 kb on - strand, within BWI76_RS00260 at 53.687 kb on + strand, within BWI76_RS00260 at 53.855 kb on - strand, within BWI76_RS00260 at 53.951 kb on - strand at 53.951 kb on - strand at 53.951 kb on - strand at 53.993 kb on + strand at 54.028 kb on + strand at 54.089 kb on - strand at 54.093 kb on + strand at 54.142 kb on + strand at 54.142 kb on + strand at 54.142 kb on + strand at 54.142 kb on + strand at 54.150 kb on - strand at 54.163 kb on + strand at 54.184 kb on + strand at 54.342 kb on + strand at 54.344 kb on + strand at 54.351 kb on - strand at 54.351 kb on - strand at 54.392 kb on + strand at 54.506 kb on - strand, within BWI76_RS00265 at 54.568 kb on + strand, within BWI76_RS00265 at 54.568 kb on + strand, within BWI76_RS00265 at 54.576 kb on - strand at 54.618 kb on + strand, within BWI76_RS00265 at 54.687 kb on - strand, within BWI76_RS00265 at 54.803 kb on + strand, within BWI76_RS00265 at 54.838 kb on - strand, within BWI76_RS00265 at 54.854 kb on - strand, within BWI76_RS00265 at 54.924 kb on - strand, within BWI76_RS00265 at 55.033 kb on + strand, within BWI76_RS00265 at 55.033 kb on + strand, within BWI76_RS00265
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x remove 51,543 - BWI76_RS00255 0.31 -2.0 51,672 + BWI76_RS00255 0.40 -1.4 51,786 - BWI76_RS00255 0.48 -1.4 51,893 - BWI76_RS00255 0.55 -0.0 51,912 + BWI76_RS00255 0.56 +0.2 52,043 - BWI76_RS00255 0.65 -0.3 52,043 - BWI76_RS00255 0.65 -1.6 52,054 + BWI76_RS00255 0.66 -0.9 52,064 + BWI76_RS00255 0.67 -2.1 52,114 + BWI76_RS00255 0.70 -0.7 52,183 + BWI76_RS00255 0.75 -0.6 52,191 - BWI76_RS00255 0.76 -1.2 52,191 - BWI76_RS00255 0.76 -1.0 52,199 - BWI76_RS00255 0.76 -1.2 52,389 - BWI76_RS00255 0.89 -1.3 52,504 - -0.9 52,599 + +1.0 52,778 + BWI76_RS00260 0.16 -0.9 52,782 + BWI76_RS00260 0.16 -2.1 52,782 + BWI76_RS00260 0.16 -2.3 52,867 - BWI76_RS00260 0.22 -1.8 53,097 - BWI76_RS00260 0.37 -0.1 53,099 - BWI76_RS00260 0.37 -1.4 53,149 - BWI76_RS00260 0.41 +0.3 53,149 - BWI76_RS00260 0.41 -0.7 53,149 - +1.2 53,257 - BWI76_RS00260 0.48 -0.5 53,362 + BWI76_RS00260 0.55 -1.2 53,417 - BWI76_RS00260 0.58 -1.2 53,417 - BWI76_RS00260 0.58 -1.3 53,441 + BWI76_RS00260 0.60 -1.1 53,457 - BWI76_RS00260 0.61 -1.5 53,671 - BWI76_RS00260 0.75 -1.6 53,687 + BWI76_RS00260 0.76 -1.1 53,855 - BWI76_RS00260 0.88 -1.0 53,951 - -0.9 53,951 - -2.6 53,951 - -0.9 53,993 + -2.1 54,028 + +1.8 54,089 - -0.2 54,093 + -0.2 54,142 + +1.2 54,142 + +0.5 54,142 + -0.4 54,142 + -0.2 54,150 - +0.2 54,163 + +0.8 54,184 + -0.0 54,342 + +1.0 54,344 + +0.2 54,351 - +0.8 54,351 - +0.9 54,392 + +0.4 54,506 - BWI76_RS00265 0.13 +0.3 54,568 + BWI76_RS00265 0.17 +0.1 54,568 + BWI76_RS00265 0.17 +1.6 54,576 - -1.0 54,618 + BWI76_RS00265 0.19 +0.4 54,687 - BWI76_RS00265 0.23 +0.2 54,803 + BWI76_RS00265 0.29 +1.3 54,838 - BWI76_RS00265 0.31 +0.5 54,854 - BWI76_RS00265 0.32 +0.2 54,924 - BWI76_RS00265 0.36 +0.6 55,033 + BWI76_RS00265 0.41 +0.7 55,033 + BWI76_RS00265 0.41 +0.5
Or see this region's nucleotide sequence