Experiment: Varel_Bryant_medium_Glucose with Sulfaquinoxaline 0.1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT4347 and BT4348 are separated by 47 nucleotides BT4348 and BT4349 are separated by 25 nucleotides BT4349 and BT4350 are separated by 198 nucleotides
BT4346: BT4346 - conserved hypothetical protein, with a Metallo-beta-lactamase superfamily domain (NCBI ptt file), at 5,729,131 to 5,730,081
BT4346
BT4347: BT4347 - RNA polymerase ECF-type sigma factor (NCBI ptt file), at 5,730,068 to 5,730,619
BT4347
BT4348: BT4348 - hypothetical protein (NCBI ptt file), at 5,730,667 to 5,731,053
BT4348
BT4349: BT4349 - hypothetical protein (NCBI ptt file), at 5,731,079 to 5,731,546
BT4349
BT4350: BT4350 - conserved hypothetical protein (NCBI ptt file), at 5,731,745 to 5,732,533
BT4350
Position (kb) 5731
5732 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 5730.119 kb on - strand at 5730.155 kb on + strand, within BT4347 at 5730.156 kb on - strand, within BT4347 at 5730.169 kb on - strand, within BT4347 at 5730.193 kb on - strand, within BT4347 at 5730.260 kb on + strand, within BT4347 at 5730.296 kb on + strand, within BT4347 at 5730.347 kb on - strand, within BT4347 at 5730.357 kb on + strand, within BT4347 at 5730.362 kb on - strand, within BT4347 at 5730.410 kb on + strand, within BT4347 at 5730.497 kb on + strand, within BT4347 at 5730.592 kb on - strand at 5730.617 kb on + strand at 5730.617 kb on + strand at 5730.667 kb on - strand at 5730.681 kb on + strand at 5730.682 kb on - strand at 5730.687 kb on - strand at 5730.734 kb on - strand, within BT4348 at 5730.842 kb on - strand, within BT4348 at 5730.843 kb on + strand, within BT4348 at 5731.021 kb on + strand at 5731.021 kb on + strand at 5731.021 kb on + strand at 5731.056 kb on + strand at 5731.056 kb on + strand at 5731.120 kb on + strand at 5731.318 kb on + strand, within BT4349 at 5731.318 kb on + strand, within BT4349 at 5731.402 kb on + strand, within BT4349 at 5731.402 kb on + strand, within BT4349 at 5731.589 kb on - strand at 5731.602 kb on + strand at 5731.615 kb on + strand at 5731.674 kb on - strand at 5731.708 kb on - strand at 5731.711 kb on + strand at 5731.711 kb on + strand at 5731.711 kb on + strand at 5731.712 kb on - strand at 5731.747 kb on - strand at 5731.747 kb on - strand at 5731.801 kb on + strand at 5731.832 kb on - strand, within BT4350 at 5731.986 kb on - strand, within BT4350 at 5732.129 kb on + strand, within BT4350 at 5732.223 kb on - strand, within BT4350 at 5732.313 kb on + strand, within BT4350 at 5732.334 kb on - strand, within BT4350 at 5732.334 kb on - strand, within BT4350 at 5732.334 kb on - strand, within BT4350 at 5732.334 kb on - strand, within BT4350 at 5732.334 kb on - strand, within BT4350 at 5732.398 kb on - strand, within BT4350 at 5732.409 kb on - strand, within BT4350 at 5732.524 kb on + strand at 5732.524 kb on + strand at 5732.525 kb on - strand at 5732.525 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Varel_Bryant_medium_Glucose with Sulfaquinoxaline 0.1 mM remove 5,730,119 - -1.0 5,730,155 + BT4347 0.16 -3.4 5,730,156 - BT4347 0.16 -1.1 5,730,169 - BT4347 0.18 -2.3 5,730,193 - BT4347 0.23 -1.0 5,730,260 + BT4347 0.35 -1.1 5,730,296 + BT4347 0.41 -0.3 5,730,347 - BT4347 0.51 -0.2 5,730,357 + BT4347 0.52 -2.3 5,730,362 - BT4347 0.53 -1.1 5,730,410 + BT4347 0.62 -1.2 5,730,497 + BT4347 0.78 +0.5 5,730,592 - +0.0 5,730,617 + -2.2 5,730,617 + -2.0 5,730,667 - +3.2 5,730,681 + -0.5 5,730,682 - -2.0 5,730,687 - +0.0 5,730,734 - BT4348 0.17 +0.0 5,730,842 - BT4348 0.45 -2.5 5,730,843 + BT4348 0.45 -2.0 5,731,021 + -0.1 5,731,021 + -2.0 5,731,021 + -0.9 5,731,056 + -1.5 5,731,056 + -0.6 5,731,120 + -1.8 5,731,318 + BT4349 0.51 -2.8 5,731,318 + BT4349 0.51 -1.0 5,731,402 + BT4349 0.69 -2.4 5,731,402 + BT4349 0.69 +0.0 5,731,589 - +2.4 5,731,602 + -1.0 5,731,615 + -1.7 5,731,674 - -1.2 5,731,708 - -0.4 5,731,711 + -1.5 5,731,711 + -0.3 5,731,711 + -1.2 5,731,712 - -1.5 5,731,747 - -2.6 5,731,747 - -0.4 5,731,801 + -0.2 5,731,832 - BT4350 0.11 -1.6 5,731,986 - BT4350 0.31 -3.8 5,732,129 + BT4350 0.49 -1.2 5,732,223 - BT4350 0.61 -1.3 5,732,313 + BT4350 0.72 +1.6 5,732,334 - BT4350 0.75 -1.0 5,732,334 - BT4350 0.75 +2.4 5,732,334 - BT4350 0.75 +0.0 5,732,334 - BT4350 0.75 -1.0 5,732,334 - BT4350 0.75 +1.6 5,732,398 - BT4350 0.83 -0.6 5,732,409 - BT4350 0.84 +0.0 5,732,524 + -1.0 5,732,524 + +0.7 5,732,525 - +1.0 5,732,525 - -1.5
Or see this region's nucleotide sequence