Experiment: Varel_Bryant_medium_Glucose with Sulfaquinoxaline 0.1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT4327 and BT4328 are separated by 21 nucleotides BT4328 and BT4329 are separated by 6 nucleotides BT4329 and BT4330 are separated by 13 nucleotides
BT4327: BT4327 - hypothetical protein (NCBI ptt file), at 5,699,823 to 5,701,370
BT4327
BT4328: BT4328 - conserved hypothetical protein (NCBI ptt file), at 5,701,392 to 5,702,090
BT4328
BT4329: BT4329 - conserved hypothetical protein with a conserved domain (NCBI ptt file), at 5,702,097 to 5,702,693
BT4329
BT4330: BT4330 - xanthosine permease (NCBI ptt file), at 5,702,707 to 5,703,957
BT4330
Position (kb) 5701
5702
5703 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 5700.444 kb on - strand, within BT4327 at 5700.521 kb on - strand, within BT4327 at 5700.602 kb on - strand, within BT4327 at 5700.712 kb on + strand, within BT4327 at 5700.713 kb on - strand, within BT4327 at 5700.939 kb on - strand, within BT4327 at 5700.939 kb on - strand, within BT4327 at 5700.939 kb on - strand, within BT4327 at 5700.939 kb on - strand, within BT4327 at 5701.070 kb on + strand, within BT4327 at 5701.071 kb on - strand, within BT4327 at 5701.072 kb on + strand, within BT4327 at 5701.072 kb on + strand, within BT4327 at 5701.073 kb on - strand, within BT4327 at 5701.248 kb on - strand at 5701.371 kb on - strand at 5701.371 kb on - strand at 5701.404 kb on + strand at 5701.461 kb on - strand at 5701.463 kb on - strand, within BT4328 at 5701.957 kb on + strand, within BT4328 at 5701.958 kb on - strand, within BT4328 at 5701.980 kb on - strand, within BT4328 at 5702.090 kb on + strand at 5702.205 kb on - strand, within BT4329 at 5702.372 kb on + strand, within BT4329 at 5702.378 kb on + strand, within BT4329 at 5702.420 kb on - strand, within BT4329 at 5702.420 kb on - strand, within BT4329 at 5702.433 kb on - strand, within BT4329 at 5702.471 kb on + strand, within BT4329 at 5702.479 kb on - strand, within BT4329 at 5702.482 kb on - strand, within BT4329 at 5702.543 kb on + strand, within BT4329 at 5702.545 kb on + strand, within BT4329 at 5702.577 kb on + strand, within BT4329 at 5702.578 kb on - strand, within BT4329 at 5702.585 kb on + strand, within BT4329 at 5702.586 kb on - strand, within BT4329 at 5702.664 kb on + strand at 5702.664 kb on + strand at 5702.674 kb on - strand at 5702.708 kb on + strand at 5702.713 kb on + strand at 5702.714 kb on - strand at 5702.718 kb on + strand at 5702.793 kb on + strand at 5702.793 kb on + strand at 5702.825 kb on - strand at 5702.825 kb on - strand at 5702.842 kb on + strand, within BT4330 at 5702.842 kb on + strand, within BT4330 at 5703.011 kb on + strand, within BT4330
Per-strain Table
Position Strand Gene LocusTag Fraction Varel_Bryant_medium_Glucose with Sulfaquinoxaline 0.1 mM remove 5,700,444 - BT4327 0.40 +0.0 5,700,521 - BT4327 0.45 -0.6 5,700,602 - BT4327 0.50 -1.0 5,700,712 + BT4327 0.57 -1.0 5,700,713 - BT4327 0.57 -1.2 5,700,939 - BT4327 0.72 +0.0 5,700,939 - BT4327 0.72 +1.2 5,700,939 - BT4327 0.72 +0.0 5,700,939 - BT4327 0.72 +0.0 5,701,070 + BT4327 0.81 +0.8 5,701,071 - BT4327 0.81 -1.0 5,701,072 + BT4327 0.81 +0.5 5,701,072 + BT4327 0.81 -3.0 5,701,073 - BT4327 0.81 -0.3 5,701,248 - -2.2 5,701,371 - -1.6 5,701,371 - -2.6 5,701,404 + -0.8 5,701,461 - +0.0 5,701,463 - BT4328 0.10 +0.3 5,701,957 + BT4328 0.81 -3.7 5,701,958 - BT4328 0.81 -1.6 5,701,980 - BT4328 0.84 -1.0 5,702,090 + -0.7 5,702,205 - BT4329 0.18 +1.3 5,702,372 + BT4329 0.46 -1.9 5,702,378 + BT4329 0.47 -1.5 5,702,420 - BT4329 0.54 +0.0 5,702,420 - BT4329 0.54 -2.6 5,702,433 - BT4329 0.56 +0.0 5,702,471 + BT4329 0.63 -1.7 5,702,479 - BT4329 0.64 -1.6 5,702,482 - BT4329 0.64 -1.0 5,702,543 + BT4329 0.75 -0.7 5,702,545 + BT4329 0.75 -0.9 5,702,577 + BT4329 0.80 -1.0 5,702,578 - BT4329 0.81 -0.4 5,702,585 + BT4329 0.82 -0.4 5,702,586 - BT4329 0.82 +0.3 5,702,664 + +0.3 5,702,664 + +0.3 5,702,674 - -1.0 5,702,708 + +0.3 5,702,713 + +0.7 5,702,714 - +0.0 5,702,718 + -1.3 5,702,793 + -1.2 5,702,793 + -2.0 5,702,825 - -0.6 5,702,825 - +1.3 5,702,842 + BT4330 0.11 -0.9 5,702,842 + BT4330 0.11 +0.5 5,703,011 + BT4330 0.24 -3.0
Or see this region's nucleotide sequence