Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT1055

Experiment: Varel_Bryant_medium_Glucose with Sulfaquinoxaline 0.1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBT1054 and BT1055 overlap by 1 nucleotidesBT1055 and BT1056 overlap by 4 nucleotidesBT1056 and BT1057 are separated by 35 nucleotides BT1054: BT1054 - ATP-dependent helicase (NCBI ptt file), at 1,337,030 to 1,340,203 BT1054 BT1055: BT1055 - pyruvate formate-lyase activating enzyme (NCBI ptt file), at 1,340,203 to 1,340,829 BT1055 BT1056: BT1056 - conserved hypothetical protein (NCBI ptt file), at 1,340,826 to 1,341,635 BT1056 BT1057: BT1057 - conserved hypothetical protein (NCBI ptt file), at 1,341,671 to 1,344,535 BT1057 Position (kb) 1340 1341Strain fitness (log2 ratio) -2 -1 0 1at 1340.247 kb on + strandat 1340.345 kb on + strand, within BT1055at 1340.558 kb on + strand, within BT1055at 1340.609 kb on + strand, within BT1055at 1340.748 kb on + strand, within BT1055at 1340.800 kb on + strandat 1340.968 kb on + strand, within BT1056at 1341.077 kb on + strand, within BT1056at 1341.173 kb on + strand, within BT1056at 1341.178 kb on + strand, within BT1056at 1341.187 kb on + strand, within BT1056at 1341.386 kb on + strand, within BT1056at 1341.397 kb on + strand, within BT1056at 1341.397 kb on + strand, within BT1056at 1341.397 kb on + strand, within BT1056at 1341.548 kb on + strand, within BT1056

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Per-strain Table

Position Strand Gene LocusTag Fraction Varel_Bryant_medium_Glucose with Sulfaquinoxaline 0.1 mM
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1,340,247 + -1.6
1,340,345 + BT1055 0.23 -2.4
1,340,558 + BT1055 0.57 -1.0
1,340,609 + BT1055 0.65 -2.3
1,340,748 + BT1055 0.87 -2.0
1,340,800 + +0.0
1,340,968 + BT1056 0.18 -2.0
1,341,077 + BT1056 0.31 +0.0
1,341,173 + BT1056 0.43 -1.6
1,341,178 + BT1056 0.43 +0.0
1,341,187 + BT1056 0.45 +0.0
1,341,386 + BT1056 0.69 -1.0
1,341,397 + BT1056 0.70 +0.2
1,341,397 + BT1056 0.70 -0.5
1,341,397 + BT1056 0.70 -1.8
1,341,548 + BT1056 0.89 -2.1

Or see this region's nucleotide sequence