Experiment: Varel_Bryant_medium_Glucose with Sulfaquinoxaline 0.1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0934 and BT0935 are separated by 72 nucleotides BT0935 and BT0936 are separated by 176 nucleotides BT0936 and BT0937 are separated by 6 nucleotides BT0937 and BT0938 are separated by 379 nucleotides BT0938 and BT0939 are separated by 176 nucleotides
BT0934: BT0934 - hypothetical protein (NCBI ptt file), at 1,147,250 to 1,147,540
BT0934
BT0935: BT0935 - hypothetical protein (NCBI ptt file), at 1,147,613 to 1,147,837
BT0935
BT0936: BT0936 - hypothetical protein (NCBI ptt file), at 1,148,014 to 1,148,316
BT0936
BT0937: BT0937 - hypothetical protein (NCBI ptt file), at 1,148,323 to 1,148,574
BT0937
BT0938: BT0938 - hypothetical protein (NCBI ptt file), at 1,148,954 to 1,149,313
BT0938
BT0939: BT0939 - hypothetical protein (NCBI ptt file), at 1,149,490 to 1,149,741
BT0939
Position (kb) 1148
1149 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 1147.366 kb on + strand, within BT0934 at 1147.367 kb on - strand, within BT0934 at 1147.427 kb on - strand, within BT0934 at 1147.433 kb on - strand, within BT0934 at 1147.449 kb on + strand, within BT0934 at 1147.518 kb on - strand at 1147.618 kb on + strand at 1147.657 kb on + strand, within BT0935 at 1147.761 kb on + strand, within BT0935 at 1147.854 kb on + strand at 1147.968 kb on + strand at 1148.013 kb on + strand at 1148.014 kb on - strand at 1148.017 kb on + strand at 1148.017 kb on + strand at 1148.017 kb on + strand at 1148.018 kb on - strand at 1148.020 kb on - strand at 1148.036 kb on + strand at 1148.041 kb on - strand at 1148.049 kb on - strand, within BT0936 at 1148.109 kb on - strand, within BT0936 at 1148.120 kb on - strand, within BT0936 at 1148.159 kb on + strand, within BT0936 at 1148.218 kb on - strand, within BT0936 at 1148.243 kb on - strand, within BT0936 at 1148.295 kb on + strand at 1148.296 kb on - strand at 1148.319 kb on + strand at 1148.334 kb on + strand at 1148.334 kb on + strand at 1148.370 kb on + strand, within BT0937 at 1148.407 kb on + strand, within BT0937 at 1148.467 kb on - strand, within BT0937 at 1148.660 kb on + strand at 1148.693 kb on + strand at 1148.696 kb on + strand at 1148.699 kb on + strand at 1148.826 kb on + strand at 1148.917 kb on - strand at 1148.977 kb on + strand at 1148.992 kb on + strand, within BT0938 at 1148.999 kb on + strand, within BT0938 at 1149.004 kb on + strand, within BT0938 at 1149.097 kb on + strand, within BT0938 at 1149.124 kb on + strand, within BT0938 at 1149.175 kb on - strand, within BT0938 at 1149.195 kb on + strand, within BT0938 at 1149.215 kb on + strand, within BT0938 at 1149.222 kb on + strand, within BT0938 at 1149.229 kb on - strand, within BT0938 at 1149.233 kb on - strand, within BT0938 at 1149.316 kb on - strand at 1149.338 kb on - strand at 1149.372 kb on + strand at 1149.372 kb on + strand at 1149.373 kb on - strand at 1149.428 kb on - strand at 1149.443 kb on - strand at 1149.507 kb on + strand at 1149.508 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Varel_Bryant_medium_Glucose with Sulfaquinoxaline 0.1 mM remove 1,147,366 + BT0934 0.40 +0.0 1,147,367 - BT0934 0.40 -1.0 1,147,427 - BT0934 0.61 +1.7 1,147,433 - BT0934 0.63 +1.6 1,147,449 + BT0934 0.68 -0.5 1,147,518 - -0.4 1,147,618 + +0.0 1,147,657 + BT0935 0.20 +0.6 1,147,761 + BT0935 0.66 +1.0 1,147,854 + -1.3 1,147,968 + -1.0 1,148,013 + +2.1 1,148,014 - -1.6 1,148,017 + -2.6 1,148,017 + -1.6 1,148,017 + +0.0 1,148,018 - -2.0 1,148,020 - +0.0 1,148,036 + +0.0 1,148,041 - +0.0 1,148,049 - BT0936 0.12 -1.0 1,148,109 - BT0936 0.31 -2.0 1,148,120 - BT0936 0.35 +0.0 1,148,159 + BT0936 0.48 -1.6 1,148,218 - BT0936 0.67 -1.0 1,148,243 - BT0936 0.76 -1.6 1,148,295 + +0.0 1,148,296 - +0.0 1,148,319 + +0.0 1,148,334 + -1.6 1,148,334 + -1.0 1,148,370 + BT0937 0.19 -4.2 1,148,407 + BT0937 0.33 -1.0 1,148,467 - BT0937 0.57 +1.0 1,148,660 + -1.6 1,148,693 + +0.7 1,148,696 + -1.6 1,148,699 + +0.4 1,148,826 + +1.0 1,148,917 - +1.2 1,148,977 + -2.7 1,148,992 + BT0938 0.11 -1.0 1,148,999 + BT0938 0.12 -1.0 1,149,004 + BT0938 0.14 -2.8 1,149,097 + BT0938 0.40 -1.7 1,149,124 + BT0938 0.47 -1.8 1,149,175 - BT0938 0.61 -1.6 1,149,195 + BT0938 0.67 -1.0 1,149,215 + BT0938 0.72 +1.0 1,149,222 + BT0938 0.74 -1.0 1,149,229 - BT0938 0.76 +1.6 1,149,233 - BT0938 0.78 -2.6 1,149,316 - -1.0 1,149,338 - +0.6 1,149,372 + +0.0 1,149,372 + +1.6 1,149,373 - -2.0 1,149,428 - -1.0 1,149,443 - -1.7 1,149,507 + +0.0 1,149,508 - -1.0
Or see this region's nucleotide sequence