Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT0891

Experiment: Varel_Bryant_medium_Glucose with Sulfaquinoxaline 0.1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBT0890 and BT0891 are separated by 75 nucleotidesBT0891 and BT0892 overlap by 13 nucleotides BT0890: BT0890 - hypothetical protein (NCBI ptt file), at 1,093,156 to 1,093,626 BT0890 BT0891: BT0891 - dihydroorotate dehydrogenase electron transfer subunit (NCBI ptt file), at 1,093,702 to 1,094,478 BT0891 BT0892: BT0892 - dihydroorotate dehydrogenase (NCBI ptt file), at 1,094,466 to 1,095,377 BT0892 Position (kb) 1093 1094 1095Strain fitness (log2 ratio) -3 -2 -1 0 1at 1093.600 kb on + strandat 1093.699 kb on + strandat 1094.002 kb on + strand, within BT0891at 1094.004 kb on + strand, within BT0891at 1094.072 kb on + strand, within BT0891at 1094.185 kb on + strand, within BT0891at 1094.188 kb on - strand, within BT0891at 1094.241 kb on + strand, within BT0891at 1094.358 kb on + strand, within BT0891at 1094.358 kb on + strand, within BT0891at 1094.669 kb on - strand, within BT0892at 1094.732 kb on - strand, within BT0892at 1094.837 kb on - strandat 1094.927 kb on - strand, within BT0892at 1095.470 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Varel_Bryant_medium_Glucose with Sulfaquinoxaline 0.1 mM
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1,093,600 + -2.0
1,093,699 + -3.1
1,094,002 + BT0891 0.39 -2.0
1,094,004 + BT0891 0.39 -2.5
1,094,072 + BT0891 0.48 -1.5
1,094,185 + BT0891 0.62 +0.0
1,094,188 - BT0891 0.63 -1.5
1,094,241 + BT0891 0.69 -2.8
1,094,358 + BT0891 0.84 +1.4
1,094,358 + BT0891 0.84 -2.0
1,094,669 - BT0892 0.22 -0.5
1,094,732 - BT0892 0.29 -2.0
1,094,837 - -1.5
1,094,927 - BT0892 0.51 -2.3
1,095,470 + -1.5

Or see this region's nucleotide sequence