Experiment: Varel_Bryant_medium_Glucose with Sulfaquinoxaline 0.1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0769 and BT0770 are separated by 39 nucleotides BT0770 and BT0771 are separated by 18 nucleotides BT0771 and BT0772 are separated by 61 nucleotides BT0772 and BT0773 are separated by 195 nucleotides
BT0769: BT0769 - conserved hypothetical protein (NCBI ptt file), at 959,290 to 959,961
BT0769
BT0770: BT0770 - conserved hypothetical protein (NCBI ptt file), at 960,001 to 960,447
BT0770
BT0771: BT0771 - 1,4-alpha-glucan branching enzyme (isoamylase or pullulanase type II) (NCBI ptt file), at 960,466 to 962,478
BT0771
BT0772: BT0772 - hypothetical protein (NCBI ptt file), at 962,540 to 963,016
BT0772
BT0773: BT0773 - alpha-amylase 3 (NCBI ptt file), at 963,212 to 964,909
BT0773
Position (kb) 960
961
962
963 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 959.530 kb on + strand, within BT0769 at 959.532 kb on + strand, within BT0769 at 959.593 kb on + strand, within BT0769 at 959.593 kb on + strand, within BT0769 at 959.701 kb on + strand, within BT0769 at 959.703 kb on + strand, within BT0769 at 959.977 kb on + strand at 960.291 kb on + strand, within BT0770 at 960.445 kb on + strand at 960.678 kb on + strand, within BT0771 at 960.691 kb on - strand, within BT0771 at 960.951 kb on + strand, within BT0771 at 960.951 kb on + strand, within BT0771 at 960.952 kb on - strand, within BT0771 at 960.952 kb on - strand, within BT0771 at 961.077 kb on + strand, within BT0771 at 961.084 kb on - strand, within BT0771 at 961.114 kb on + strand, within BT0771 at 961.407 kb on + strand, within BT0771 at 961.465 kb on - strand, within BT0771 at 961.471 kb on + strand, within BT0771 at 961.507 kb on + strand, within BT0771 at 961.507 kb on + strand, within BT0771 at 961.680 kb on + strand, within BT0771 at 961.769 kb on + strand, within BT0771 at 961.848 kb on + strand, within BT0771 at 961.885 kb on - strand, within BT0771 at 961.978 kb on + strand, within BT0771 at 962.196 kb on + strand, within BT0771 at 962.277 kb on - strand at 962.282 kb on - strand at 962.403 kb on + strand at 962.518 kb on + strand at 962.519 kb on - strand at 962.541 kb on + strand at 962.572 kb on - strand at 962.572 kb on - strand at 962.572 kb on - strand at 962.575 kb on + strand at 962.576 kb on - strand at 962.642 kb on + strand, within BT0772 at 962.754 kb on + strand, within BT0772 at 962.754 kb on + strand, within BT0772 at 962.754 kb on + strand, within BT0772 at 962.757 kb on - strand, within BT0772 at 962.854 kb on + strand, within BT0772 at 962.898 kb on - strand, within BT0772 at 962.973 kb on + strand at 962.981 kb on + strand at 962.982 kb on - strand at 962.985 kb on - strand at 962.987 kb on + strand at 963.089 kb on + strand at 963.090 kb on - strand at 963.170 kb on + strand at 963.176 kb on - strand at 963.243 kb on + strand at 963.273 kb on + strand at 963.273 kb on + strand at 963.282 kb on - strand at 963.320 kb on - strand at 963.345 kb on - strand at 963.375 kb on - strand at 963.467 kb on - strand, within BT0773
Per-strain Table
Position Strand Gene LocusTag Fraction Varel_Bryant_medium_Glucose with Sulfaquinoxaline 0.1 mM remove 959,530 + BT0769 0.36 -1.0 959,532 + BT0769 0.36 +1.0 959,593 + BT0769 0.45 -1.0 959,593 + BT0769 0.45 -0.5 959,701 + BT0769 0.61 -3.0 959,703 + BT0769 0.61 +1.0 959,977 + -3.6 960,291 + BT0770 0.65 -1.1 960,445 + -0.3 960,678 + BT0771 0.11 -1.0 960,691 - BT0771 0.11 -0.0 960,951 + BT0771 0.24 -0.0 960,951 + BT0771 0.24 -1.9 960,952 - BT0771 0.24 -1.6 960,952 - BT0771 0.24 -1.6 961,077 + BT0771 0.30 -2.8 961,084 - BT0771 0.31 -1.0 961,114 + BT0771 0.32 -2.8 961,407 + BT0771 0.47 -1.0 961,465 - BT0771 0.50 -1.0 961,471 + BT0771 0.50 -2.6 961,507 + BT0771 0.52 -2.8 961,507 + BT0771 0.52 -0.0 961,680 + BT0771 0.60 -3.5 961,769 + BT0771 0.65 -2.0 961,848 + BT0771 0.69 -1.6 961,885 - BT0771 0.70 -0.0 961,978 + BT0771 0.75 -2.8 962,196 + BT0771 0.86 -3.9 962,277 - -0.0 962,282 - -2.0 962,403 + -1.0 962,518 + -0.2 962,519 - +1.0 962,541 + -0.0 962,572 - -3.5 962,572 - +1.6 962,572 - +0.3 962,575 + -0.5 962,576 - -0.0 962,642 + BT0772 0.21 -0.8 962,754 + BT0772 0.45 +1.3 962,754 + BT0772 0.45 -2.1 962,754 + BT0772 0.45 -0.3 962,757 - BT0772 0.45 -0.0 962,854 + BT0772 0.66 +1.5 962,898 - BT0772 0.75 -0.3 962,973 + -1.0 962,981 + -0.4 962,982 - -1.0 962,985 - -1.0 962,987 + -3.7 963,089 + -2.0 963,090 - -1.6 963,170 + +0.6 963,176 - -1.6 963,243 + +2.0 963,273 + -0.0 963,273 + -0.7 963,282 - -0.0 963,320 - +0.7 963,345 - -0.0 963,375 - -0.2 963,467 - BT0773 0.15 -2.3
Or see this region's nucleotide sequence