Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT0531

Experiment: Varel_Bryant_medium_Glucose with Sulfaquinoxaline 0.1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBT0530 and BT0531 are separated by 4 nucleotidesBT0531 and BT0532 are separated by 68 nucleotides BT0530: BT0530 - anthranilate phosphoribosyltransferase (EC 2.4.2.18) (from data), at 653,313 to 654,311 BT0530 BT0531: BT0531 - anthranilate synthase component II (NCBI ptt file), at 654,316 to 654,882 BT0531 BT0532: BT0532 - anthranilate synthase component I (NCBI ptt file), at 654,951 to 656,357 BT0532 Position (kb) 654 655Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 653.424 kb on + strand, within BT0530at 653.451 kb on - strand, within BT0530at 653.498 kb on + strand, within BT0530at 653.609 kb on + strand, within BT0530at 653.699 kb on + strand, within BT0530at 653.700 kb on - strand, within BT0530at 653.701 kb on + strand, within BT0530at 653.701 kb on + strand, within BT0530at 653.706 kb on - strand, within BT0530at 653.729 kb on + strand, within BT0530at 653.730 kb on - strand, within BT0530at 653.731 kb on + strand, within BT0530at 653.732 kb on - strand, within BT0530at 653.879 kb on + strand, within BT0530at 653.973 kb on - strand, within BT0530at 653.995 kb on - strand, within BT0530at 654.154 kb on - strand, within BT0530at 654.191 kb on + strand, within BT0530at 654.248 kb on + strandat 654.250 kb on + strandat 654.251 kb on + strandat 654.275 kb on - strandat 654.293 kb on + strandat 654.296 kb on - strandat 654.416 kb on - strand, within BT0531at 654.451 kb on + strand, within BT0531at 654.541 kb on + strand, within BT0531at 654.575 kb on - strand, within BT0531at 654.688 kb on - strand, within BT0531at 654.739 kb on + strand, within BT0531at 654.999 kb on + strandat 655.000 kb on - strandat 655.011 kb on + strandat 655.250 kb on + strandat 655.333 kb on + strand, within BT0532at 655.346 kb on + strand, within BT0532at 655.363 kb on - strand, within BT0532at 655.363 kb on - strand, within BT0532at 655.797 kb on - strand, within BT0532at 655.798 kb on + strand, within BT0532

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Per-strain Table

Position Strand Gene LocusTag Fraction Varel_Bryant_medium_Glucose with Sulfaquinoxaline 0.1 mM
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653,424 + BT0530 0.11 -4.6
653,451 - BT0530 0.14 -2.3
653,498 + BT0530 0.19 +0.0
653,609 + BT0530 0.30 -1.6
653,699 + BT0530 0.39 -2.6
653,700 - BT0530 0.39 -0.6
653,701 + BT0530 0.39 -1.6
653,701 + BT0530 0.39 -1.6
653,706 - BT0530 0.39 -2.8
653,729 + BT0530 0.42 -1.0
653,730 - BT0530 0.42 -2.3
653,731 + BT0530 0.42 -4.2
653,732 - BT0530 0.42 +0.0
653,879 + BT0530 0.57 -1.6
653,973 - BT0530 0.66 -2.6
653,995 - BT0530 0.68 -2.0
654,154 - BT0530 0.84 -1.0
654,191 + BT0530 0.88 -2.3
654,248 + -4.2
654,250 + +0.0
654,251 + -2.0
654,275 - +0.0
654,293 + -1.8
654,296 - -1.9
654,416 - BT0531 0.18 -0.7
654,451 + BT0531 0.24 -2.0
654,541 + BT0531 0.40 -3.0
654,575 - BT0531 0.46 -2.8
654,688 - BT0531 0.66 -2.8
654,739 + BT0531 0.75 -1.0
654,999 + +0.0
655,000 - -3.6
655,011 + -3.7
655,250 + -1.6
655,333 + BT0532 0.27 -2.7
655,346 + BT0532 0.28 -0.7
655,363 - BT0532 0.29 -0.0
655,363 - BT0532 0.29 -0.0
655,797 - BT0532 0.60 -2.3
655,798 + BT0532 0.60 -3.2

Or see this region's nucleotide sequence