Experiment: Varel_Bryant_medium_Glucose with Sulfaquinoxaline 0.1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0526 and BT0527 are separated by 265 nucleotides BT0527 and BT0528 are separated by 18 nucleotides BT0528 and BT0529 are separated by 30 nucleotides
BT0526: BT0526 - L-asparaginase I (NCBI ptt file), at 649,703 to 650,743
BT0526
BT0527: BT0527 - tryptophan synthase alpha chain (NCBI ptt file), at 651,009 to 651,779
BT0527
BT0528: BT0528 - phosphoribosylanthranilate isomerase (EC 5.3.1.24) <small>(from data)</small>, at 651,798 to 652,421
BT0528
BT0529: BT0529 - indole-3-glycerol phosphate synthase (NCBI ptt file), at 652,452 to 653,234
BT0529
Position (kb) 651
652 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 650.075 kb on + strand, within BT0526 at 650.103 kb on + strand, within BT0526 at 650.143 kb on + strand, within BT0526 at 650.164 kb on + strand, within BT0526 at 650.175 kb on - strand, within BT0526 at 650.216 kb on - strand, within BT0526 at 650.243 kb on - strand, within BT0526 at 650.243 kb on - strand, within BT0526 at 650.282 kb on + strand, within BT0526 at 650.283 kb on - strand, within BT0526 at 650.296 kb on + strand, within BT0526 at 650.464 kb on + strand, within BT0526 at 650.465 kb on - strand, within BT0526 at 650.509 kb on + strand, within BT0526 at 650.511 kb on + strand, within BT0526 at 650.512 kb on - strand, within BT0526 at 650.526 kb on - strand, within BT0526 at 650.587 kb on - strand, within BT0526 at 650.602 kb on - strand, within BT0526 at 650.602 kb on - strand, within BT0526 at 650.778 kb on + strand at 650.785 kb on + strand at 650.871 kb on - strand at 650.978 kb on + strand at 650.978 kb on + strand at 651.010 kb on + strand at 651.096 kb on - strand, within BT0527 at 651.132 kb on - strand, within BT0527 at 651.147 kb on - strand, within BT0527 at 651.182 kb on + strand, within BT0527 at 651.183 kb on - strand, within BT0527 at 651.183 kb on - strand, within BT0527 at 651.243 kb on - strand, within BT0527 at 651.264 kb on - strand, within BT0527 at 651.264 kb on - strand, within BT0527 at 651.265 kb on + strand, within BT0527 at 651.266 kb on - strand, within BT0527 at 651.266 kb on - strand, within BT0527 at 651.473 kb on + strand, within BT0527 at 651.474 kb on - strand, within BT0527 at 651.477 kb on - strand, within BT0527 at 651.484 kb on - strand, within BT0527 at 651.484 kb on - strand, within BT0527 at 651.498 kb on + strand, within BT0527 at 651.514 kb on - strand, within BT0527 at 651.514 kb on - strand, within BT0527 at 651.574 kb on - strand, within BT0527 at 651.674 kb on + strand, within BT0527 at 651.977 kb on - strand, within BT0528 at 652.021 kb on + strand, within BT0528 at 652.077 kb on + strand, within BT0528 at 652.156 kb on + strand, within BT0528 at 652.189 kb on + strand, within BT0528 at 652.190 kb on - strand, within BT0528 at 652.190 kb on - strand, within BT0528 at 652.350 kb on + strand, within BT0528 at 652.351 kb on - strand, within BT0528 at 652.395 kb on + strand at 652.448 kb on - strand at 652.449 kb on + strand at 652.453 kb on + strand at 652.454 kb on - strand at 652.645 kb on - strand, within BT0529 at 652.709 kb on + strand, within BT0529 at 652.710 kb on - strand, within BT0529 at 652.710 kb on - strand, within BT0529 at 652.717 kb on - strand, within BT0529
Per-strain Table
Position Strand Gene LocusTag Fraction Varel_Bryant_medium_Glucose with Sulfaquinoxaline 0.1 mM remove 650,075 + BT0526 0.36 -3.2 650,103 + BT0526 0.38 -1.0 650,143 + BT0526 0.42 -1.0 650,164 + BT0526 0.44 -0.6 650,175 - BT0526 0.45 -1.5 650,216 - BT0526 0.49 -1.0 650,243 - BT0526 0.52 -1.2 650,243 - BT0526 0.52 -1.5 650,282 + BT0526 0.56 -0.4 650,283 - BT0526 0.56 +0.0 650,296 + BT0526 0.57 +1.0 650,464 + BT0526 0.73 +0.0 650,465 - BT0526 0.73 -3.1 650,509 + BT0526 0.77 +1.6 650,511 + BT0526 0.78 -2.5 650,512 - BT0526 0.78 -0.4 650,526 - BT0526 0.79 -2.5 650,587 - BT0526 0.85 -2.5 650,602 - BT0526 0.86 +0.0 650,602 - BT0526 0.86 -1.5 650,778 + +1.0 650,785 + -1.0 650,871 - -1.6 650,978 + -2.3 650,978 + +2.4 651,010 + +1.0 651,096 - BT0527 0.11 -1.6 651,132 - BT0527 0.16 -2.6 651,147 - BT0527 0.18 +0.0 651,182 + BT0527 0.22 -2.0 651,183 - BT0527 0.23 -1.6 651,183 - BT0527 0.23 -1.6 651,243 - BT0527 0.30 -2.8 651,264 - BT0527 0.33 -1.0 651,264 - BT0527 0.33 -3.1 651,265 + BT0527 0.33 -2.1 651,266 - BT0527 0.33 -1.0 651,266 - BT0527 0.33 -1.0 651,473 + BT0527 0.60 -1.6 651,474 - BT0527 0.60 +0.0 651,477 - BT0527 0.61 +0.0 651,484 - BT0527 0.62 -2.0 651,484 - BT0527 0.62 +0.0 651,498 + BT0527 0.63 -4.0 651,514 - BT0527 0.65 +0.0 651,514 - BT0527 0.65 +0.0 651,574 - BT0527 0.73 -3.1 651,674 + BT0527 0.86 -0.7 651,977 - BT0528 0.29 +0.0 652,021 + BT0528 0.36 -2.3 652,077 + BT0528 0.45 +0.0 652,156 + BT0528 0.57 +0.0 652,189 + BT0528 0.63 -2.6 652,190 - BT0528 0.63 -2.0 652,190 - BT0528 0.63 -1.0 652,350 + BT0528 0.88 -3.8 652,351 - BT0528 0.89 -5.6 652,395 + -1.7 652,448 - -2.6 652,449 + +0.0 652,453 + -1.0 652,454 - -2.0 652,645 - BT0529 0.25 +0.0 652,709 + BT0529 0.33 +0.0 652,710 - BT0529 0.33 -1.6 652,710 - BT0529 0.33 +0.0 652,717 - BT0529 0.34 -2.0
Or see this region's nucleotide sequence