Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS30910

Experiment: adipate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS30905 and RR42_RS30910 overlap by 22 nucleotidesRR42_RS30910 and RR42_RS30915 overlap by 13 nucleotidesRR42_RS30915 and RR42_RS30920 overlap by 1 nucleotides RR42_RS30905: RR42_RS30905 - aminotransferase DegT, at 2,315,117 to 2,316,280 _RS30905 RR42_RS30910: RR42_RS30910 - UDP-4-amino-4-deoxy-L-arabinose-oxoglutarate aminotransferase, at 2,316,259 to 2,317,251 _RS30910 RR42_RS30915: RR42_RS30915 - formyltransferase, at 2,317,239 to 2,318,198 _RS30915 RR42_RS30920: RR42_RS30920 - UDP-4-amino-4-deoxy-L-arabinose formyltransferase, at 2,318,198 to 2,319,169 _RS30920 Position (kb) 2316 2317 2318Strain fitness (log2 ratio) -1 0 1at 2315.516 kb on + strand, within RR42_RS30905at 2315.912 kb on + strand, within RR42_RS30905at 2316.122 kb on + strand, within RR42_RS30905at 2316.250 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction adipate (C)
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2,315,516 + RR42_RS30905 0.34 +0.9
2,315,912 + RR42_RS30905 0.68 -0.8
2,316,122 + RR42_RS30905 0.86 +0.7
2,316,250 + +0.6

Or see this region's nucleotide sequence