Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS28495

Experiment: adipate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRR42_RS28485 and RR42_RS28490 are separated by 191 nucleotidesRR42_RS28490 and RR42_RS28495 are separated by 55 nucleotidesRR42_RS28495 and RR42_RS28500 are separated by 80 nucleotides RR42_RS28485: RR42_RS28485 - short-chain dehydrogenase, at 1,748,970 to 1,749,698 _RS28485 RR42_RS28490: RR42_RS28490 - hypothetical protein, at 1,749,890 to 1,750,270 _RS28490 RR42_RS28495: RR42_RS28495 - toluene tolerance protein, at 1,750,326 to 1,750,958 _RS28495 RR42_RS28500: RR42_RS28500 - hypothetical protein, at 1,751,039 to 1,751,809 _RS28500 Position (kb) 1750 1751Strain fitness (log2 ratio) -2 -1 0 1 2at 1749.612 kb on - strand, within RR42_RS28485at 1749.612 kb on - strand, within RR42_RS28485at 1749.835 kb on - strandat 1750.031 kb on + strand, within RR42_RS28490at 1750.031 kb on + strand, within RR42_RS28490at 1750.206 kb on + strand, within RR42_RS28490at 1750.206 kb on + strand, within RR42_RS28490at 1750.206 kb on + strand, within RR42_RS28490at 1750.206 kb on + strand, within RR42_RS28490at 1750.207 kb on - strand, within RR42_RS28490at 1750.288 kb on + strandat 1750.306 kb on + strandat 1750.307 kb on - strandat 1750.530 kb on + strand, within RR42_RS28495at 1750.530 kb on + strand, within RR42_RS28495at 1750.530 kb on + strand, within RR42_RS28495at 1750.531 kb on - strand, within RR42_RS28495at 1750.644 kb on + strand, within RR42_RS28495at 1750.644 kb on + strand, within RR42_RS28495at 1750.783 kb on - strand, within RR42_RS28495at 1750.819 kb on - strand, within RR42_RS28495at 1750.819 kb on - strand, within RR42_RS28495at 1750.928 kb on + strandat 1750.957 kb on - strandat 1751.045 kb on + strandat 1751.046 kb on - strandat 1751.046 kb on - strandat 1751.209 kb on + strand, within RR42_RS28500at 1751.209 kb on + strand, within RR42_RS28500at 1751.210 kb on - strand, within RR42_RS28500at 1751.210 kb on - strand, within RR42_RS28500at 1751.240 kb on + strand, within RR42_RS28500at 1751.327 kb on - strand, within RR42_RS28500at 1751.417 kb on + strand, within RR42_RS28500at 1751.417 kb on + strand, within RR42_RS28500at 1751.418 kb on - strand, within RR42_RS28500at 1751.569 kb on - strand, within RR42_RS28500at 1751.569 kb on - strand, within RR42_RS28500at 1751.646 kb on - strand, within RR42_RS28500at 1751.760 kb on + strandat 1751.761 kb on - strandat 1751.761 kb on - strandat 1751.813 kb on + strandat 1751.814 kb on - strandat 1751.814 kb on - strandat 1751.814 kb on - strandat 1751.838 kb on + strandat 1751.844 kb on - strandat 1751.954 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction adipate (C)
remove
1,749,612 - RR42_RS28485 0.88 -0.2
1,749,612 - RR42_RS28485 0.88 -1.4
1,749,835 - -1.2
1,750,031 + RR42_RS28490 0.37 +2.1
1,750,031 + RR42_RS28490 0.37 +1.2
1,750,206 + RR42_RS28490 0.83 +1.1
1,750,206 + RR42_RS28490 0.83 -0.5
1,750,206 + RR42_RS28490 0.83 +0.6
1,750,206 + RR42_RS28490 0.83 -1.9
1,750,207 - RR42_RS28490 0.83 -0.6
1,750,288 + +1.7
1,750,306 + +0.1
1,750,307 - +0.2
1,750,530 + RR42_RS28495 0.32 -0.2
1,750,530 + RR42_RS28495 0.32 -1.1
1,750,530 + RR42_RS28495 0.32 -1.9
1,750,531 - RR42_RS28495 0.32 +1.7
1,750,644 + RR42_RS28495 0.50 +0.4
1,750,644 + RR42_RS28495 0.50 +0.6
1,750,783 - RR42_RS28495 0.72 -0.1
1,750,819 - RR42_RS28495 0.78 +0.6
1,750,819 - RR42_RS28495 0.78 -1.0
1,750,928 + -0.3
1,750,957 - +0.3
1,751,045 + -0.0
1,751,046 - -1.8
1,751,046 - -0.9
1,751,209 + RR42_RS28500 0.22 -0.2
1,751,209 + RR42_RS28500 0.22 -0.6
1,751,210 - RR42_RS28500 0.22 +0.8
1,751,210 - RR42_RS28500 0.22 +0.9
1,751,240 + RR42_RS28500 0.26 +0.0
1,751,327 - RR42_RS28500 0.37 +0.9
1,751,417 + RR42_RS28500 0.49 +0.7
1,751,417 + RR42_RS28500 0.49 -0.6
1,751,418 - RR42_RS28500 0.49 +1.1
1,751,569 - RR42_RS28500 0.69 -0.9
1,751,569 - RR42_RS28500 0.69 -0.6
1,751,646 - RR42_RS28500 0.79 +0.5
1,751,760 + -0.4
1,751,761 - +0.3
1,751,761 - -0.1
1,751,813 + -0.1
1,751,814 - -0.8
1,751,814 - -0.3
1,751,814 - +0.5
1,751,838 + -0.3
1,751,844 - +0.9
1,751,954 - -0.9

Or see this region's nucleotide sequence