Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS24235

Experiment: adipate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS24225 and RR42_RS24230 are separated by 38 nucleotidesRR42_RS24230 and RR42_RS24235 overlap by 4 nucleotidesRR42_RS24235 and RR42_RS24240 are separated by 531 nucleotides RR42_RS24225: RR42_RS24225 - hypothetical protein, at 760,968 to 762,137 _RS24225 RR42_RS24230: RR42_RS24230 - 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase, at 762,176 to 763,069 _RS24230 RR42_RS24235: RR42_RS24235 - hypothetical protein, at 763,066 to 763,527 _RS24235 RR42_RS24240: RR42_RS24240 - hypothetical protein, at 764,059 to 765,057 _RS24240 Position (kb) 763 764Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 762.118 kb on - strandat 762.155 kb on + strandat 762.155 kb on + strandat 762.234 kb on - strandat 762.234 kb on - strandat 762.288 kb on + strand, within RR42_RS24230at 762.288 kb on + strand, within RR42_RS24230at 762.289 kb on - strand, within RR42_RS24230at 762.317 kb on - strand, within RR42_RS24230at 762.414 kb on + strand, within RR42_RS24230at 762.436 kb on - strand, within RR42_RS24230at 762.442 kb on - strand, within RR42_RS24230at 762.528 kb on - strand, within RR42_RS24230at 762.530 kb on + strand, within RR42_RS24230at 762.530 kb on + strand, within RR42_RS24230at 762.530 kb on + strand, within RR42_RS24230at 762.531 kb on - strand, within RR42_RS24230at 762.531 kb on - strand, within RR42_RS24230at 762.531 kb on - strand, within RR42_RS24230at 762.590 kb on - strand, within RR42_RS24230at 762.614 kb on + strand, within RR42_RS24230at 762.764 kb on + strand, within RR42_RS24230at 762.765 kb on - strand, within RR42_RS24230at 762.765 kb on - strand, within RR42_RS24230at 762.765 kb on - strand, within RR42_RS24230at 762.765 kb on - strand, within RR42_RS24230at 762.765 kb on - strand, within RR42_RS24230at 762.765 kb on - strand, within RR42_RS24230at 762.829 kb on - strand, within RR42_RS24230at 762.829 kb on - strand, within RR42_RS24230at 762.862 kb on + strand, within RR42_RS24230at 762.863 kb on - strand, within RR42_RS24230at 762.863 kb on - strand, within RR42_RS24230at 762.863 kb on - strand, within RR42_RS24230at 762.863 kb on - strand, within RR42_RS24230at 762.863 kb on - strand, within RR42_RS24230at 762.863 kb on - strand, within RR42_RS24230at 762.863 kb on - strand, within RR42_RS24230at 762.923 kb on + strand, within RR42_RS24230at 762.923 kb on + strand, within RR42_RS24230at 762.923 kb on + strand, within RR42_RS24230at 762.923 kb on + strand, within RR42_RS24230at 762.924 kb on - strand, within RR42_RS24230at 762.926 kb on - strand, within RR42_RS24230at 762.926 kb on - strand, within RR42_RS24230at 762.930 kb on + strand, within RR42_RS24230at 762.930 kb on + strand, within RR42_RS24230at 763.180 kb on + strand, within RR42_RS24235at 763.180 kb on + strand, within RR42_RS24235at 763.294 kb on + strand, within RR42_RS24235at 763.461 kb on - strand, within RR42_RS24235at 763.576 kb on + strandat 763.576 kb on + strandat 763.577 kb on - strandat 763.643 kb on + strandat 763.644 kb on - strandat 763.644 kb on - strandat 763.765 kb on - strandat 763.781 kb on + strandat 763.782 kb on - strandat 763.782 kb on - strandat 763.786 kb on + strandat 763.787 kb on - strandat 763.805 kb on - strandat 763.805 kb on - strandat 763.848 kb on + strandat 763.848 kb on + strandat 763.864 kb on + strandat 763.864 kb on + strandat 763.900 kb on + strandat 763.901 kb on - strandat 763.901 kb on - strandat 763.980 kb on - strandat 764.022 kb on + strandat 764.023 kb on - strandat 764.070 kb on + strandat 764.112 kb on - strandat 764.120 kb on + strandat 764.154 kb on - strandat 764.222 kb on + strand, within RR42_RS24240at 764.222 kb on + strand, within RR42_RS24240at 764.223 kb on - strand, within RR42_RS24240at 764.223 kb on - strand, within RR42_RS24240at 764.223 kb on - strand, within RR42_RS24240at 764.349 kb on + strand, within RR42_RS24240at 764.349 kb on + strand, within RR42_RS24240at 764.350 kb on - strand, within RR42_RS24240at 764.413 kb on + strand, within RR42_RS24240at 764.413 kb on + strand, within RR42_RS24240at 764.413 kb on + strand, within RR42_RS24240at 764.414 kb on - strand, within RR42_RS24240at 764.460 kb on + strand, within RR42_RS24240at 764.460 kb on + strand, within RR42_RS24240at 764.461 kb on - strand, within RR42_RS24240at 764.461 kb on - strand, within RR42_RS24240at 764.461 kb on - strand, within RR42_RS24240at 764.478 kb on + strand, within RR42_RS24240at 764.516 kb on + strand, within RR42_RS24240

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Per-strain Table

Position Strand Gene LocusTag Fraction adipate (C)
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762,118 - -0.4
762,155 + +0.0
762,155 + -1.6
762,234 - -1.0
762,234 - +0.8
762,288 + RR42_RS24230 0.13 +0.9
762,288 + RR42_RS24230 0.13 -1.8
762,289 - RR42_RS24230 0.13 +0.4
762,317 - RR42_RS24230 0.16 -0.1
762,414 + RR42_RS24230 0.27 +0.8
762,436 - RR42_RS24230 0.29 +3.0
762,442 - RR42_RS24230 0.30 -0.6
762,528 - RR42_RS24230 0.39 +1.4
762,530 + RR42_RS24230 0.40 -0.4
762,530 + RR42_RS24230 0.40 +1.6
762,530 + RR42_RS24230 0.40 +0.8
762,531 - RR42_RS24230 0.40 -0.3
762,531 - RR42_RS24230 0.40 -0.1
762,531 - RR42_RS24230 0.40 +1.4
762,590 - RR42_RS24230 0.46 +0.4
762,614 + RR42_RS24230 0.49 -2.8
762,764 + RR42_RS24230 0.66 +0.5
762,765 - RR42_RS24230 0.66 -0.1
762,765 - RR42_RS24230 0.66 +0.9
762,765 - RR42_RS24230 0.66 -0.1
762,765 - RR42_RS24230 0.66 -0.0
762,765 - RR42_RS24230 0.66 -0.6
762,765 - RR42_RS24230 0.66 +0.1
762,829 - RR42_RS24230 0.73 -0.3
762,829 - RR42_RS24230 0.73 -1.3
762,862 + RR42_RS24230 0.77 -0.6
762,863 - RR42_RS24230 0.77 -0.0
762,863 - RR42_RS24230 0.77 +0.4
762,863 - RR42_RS24230 0.77 +0.0
762,863 - RR42_RS24230 0.77 +0.6
762,863 - RR42_RS24230 0.77 -1.8
762,863 - RR42_RS24230 0.77 +0.2
762,863 - RR42_RS24230 0.77 +0.7
762,923 + RR42_RS24230 0.84 +0.1
762,923 + RR42_RS24230 0.84 +1.3
762,923 + RR42_RS24230 0.84 -0.6
762,923 + RR42_RS24230 0.84 -0.9
762,924 - RR42_RS24230 0.84 +1.3
762,926 - RR42_RS24230 0.84 -0.2
762,926 - RR42_RS24230 0.84 -0.2
762,930 + RR42_RS24230 0.84 -1.3
762,930 + RR42_RS24230 0.84 -0.0
763,180 + RR42_RS24235 0.25 -1.2
763,180 + RR42_RS24235 0.25 -0.1
763,294 + RR42_RS24235 0.49 -2.1
763,461 - RR42_RS24235 0.85 -0.7
763,576 + -1.0
763,576 + -0.1
763,577 - -2.1
763,643 + -0.1
763,644 - -2.8
763,644 - -2.1
763,765 - +0.3
763,781 + -1.3
763,782 - +0.1
763,782 - -1.1
763,786 + +0.4
763,787 - +0.3
763,805 - -0.3
763,805 - +0.2
763,848 + +0.1
763,848 + +0.3
763,864 + +0.2
763,864 + +0.1
763,900 + -0.4
763,901 - -0.2
763,901 - +0.1
763,980 - +1.1
764,022 + +0.7
764,023 - +0.3
764,070 + -1.4
764,112 - +0.2
764,120 + +0.5
764,154 - +1.4
764,222 + RR42_RS24240 0.16 +0.2
764,222 + RR42_RS24240 0.16 +0.9
764,223 - RR42_RS24240 0.16 +0.7
764,223 - RR42_RS24240 0.16 +0.9
764,223 - RR42_RS24240 0.16 -0.1
764,349 + RR42_RS24240 0.29 +0.4
764,349 + RR42_RS24240 0.29 -0.2
764,350 - RR42_RS24240 0.29 -0.6
764,413 + RR42_RS24240 0.35 -0.8
764,413 + RR42_RS24240 0.35 +0.4
764,413 + RR42_RS24240 0.35 -0.0
764,414 - RR42_RS24240 0.36 +0.4
764,460 + RR42_RS24240 0.40 -0.8
764,460 + RR42_RS24240 0.40 -0.5
764,461 - RR42_RS24240 0.40 -0.0
764,461 - RR42_RS24240 0.40 -0.9
764,461 - RR42_RS24240 0.40 -0.1
764,478 + RR42_RS24240 0.42 +0.3
764,516 + RR42_RS24240 0.46 +0.3

Or see this region's nucleotide sequence