Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS23700

Experiment: adipate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS23690 and RR42_RS23695 are separated by 85 nucleotidesRR42_RS23695 and RR42_RS23700 are separated by 99 nucleotidesRR42_RS23700 and RR42_RS23705 are separated by 51 nucleotides RR42_RS23690: RR42_RS23690 - 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase, at 641,287 to 642,054 _RS23690 RR42_RS23695: RR42_RS23695 - dihydroxynaphthoic acid synthetase, at 642,140 to 642,922 _RS23695 RR42_RS23700: RR42_RS23700 - acyl-CoA dehydrogenase, at 643,022 to 644,173 _RS23700 RR42_RS23705: RR42_RS23705 - cyclohexanecarboxylate--CoA ligase, at 644,225 to 645,877 _RS23705 Position (kb) 643 644 645Strain fitness (log2 ratio) -2 -1 0 1at 642.146 kb on + strandat 642.146 kb on + strandat 642.147 kb on - strandat 642.161 kb on + strandat 642.162 kb on - strandat 642.272 kb on + strand, within RR42_RS23695at 642.273 kb on - strand, within RR42_RS23695at 642.362 kb on + strand, within RR42_RS23695at 642.363 kb on - strand, within RR42_RS23695at 642.456 kb on - strand, within RR42_RS23695at 642.623 kb on + strand, within RR42_RS23695at 642.623 kb on + strand, within RR42_RS23695at 642.623 kb on + strand, within RR42_RS23695at 642.624 kb on - strand, within RR42_RS23695at 642.624 kb on - strand, within RR42_RS23695at 642.625 kb on + strand, within RR42_RS23695at 642.625 kb on + strand, within RR42_RS23695at 642.625 kb on + strand, within RR42_RS23695at 642.625 kb on + strand, within RR42_RS23695at 642.625 kb on + strand, within RR42_RS23695at 642.626 kb on - strand, within RR42_RS23695at 642.626 kb on - strand, within RR42_RS23695at 642.626 kb on - strand, within RR42_RS23695at 642.626 kb on - strand, within RR42_RS23695at 642.626 kb on - strand, within RR42_RS23695at 642.626 kb on - strand, within RR42_RS23695at 642.626 kb on - strand, within RR42_RS23695at 642.824 kb on + strand, within RR42_RS23695at 642.825 kb on - strand, within RR42_RS23695at 642.825 kb on - strand, within RR42_RS23695at 642.825 kb on - strand, within RR42_RS23695at 642.839 kb on + strand, within RR42_RS23695at 642.839 kb on + strand, within RR42_RS23695at 642.839 kb on + strand, within RR42_RS23695at 642.839 kb on + strand, within RR42_RS23695at 642.842 kb on + strand, within RR42_RS23695at 642.842 kb on + strand, within RR42_RS23695at 642.911 kb on + strandat 642.920 kb on + strandat 642.931 kb on - strandat 643.032 kb on - strandat 643.032 kb on - strandat 643.090 kb on + strandat 643.171 kb on + strand, within RR42_RS23700at 643.172 kb on - strand, within RR42_RS23700at 643.172 kb on - strand, within RR42_RS23700at 643.274 kb on + strand, within RR42_RS23700at 643.274 kb on + strand, within RR42_RS23700at 643.274 kb on + strand, within RR42_RS23700at 643.274 kb on + strand, within RR42_RS23700at 643.274 kb on + strand, within RR42_RS23700at 643.274 kb on + strand, within RR42_RS23700at 643.275 kb on - strand, within RR42_RS23700at 643.275 kb on - strand, within RR42_RS23700at 643.460 kb on + strand, within RR42_RS23700at 643.460 kb on + strand, within RR42_RS23700at 643.460 kb on + strand, within RR42_RS23700at 643.460 kb on + strand, within RR42_RS23700at 643.461 kb on - strand, within RR42_RS23700at 643.767 kb on + strand, within RR42_RS23700at 643.808 kb on + strand, within RR42_RS23700at 643.808 kb on + strand, within RR42_RS23700at 643.808 kb on + strand, within RR42_RS23700at 643.808 kb on + strand, within RR42_RS23700at 643.809 kb on - strand, within RR42_RS23700at 643.809 kb on - strand, within RR42_RS23700at 643.809 kb on - strand, within RR42_RS23700at 644.001 kb on - strand, within RR42_RS23700at 644.001 kb on - strand, within RR42_RS23700at 644.229 kb on - strandat 644.396 kb on + strand, within RR42_RS23705at 644.514 kb on - strand, within RR42_RS23705at 644.648 kb on + strand, within RR42_RS23705at 644.648 kb on + strand, within RR42_RS23705at 644.649 kb on - strand, within RR42_RS23705at 644.816 kb on + strand, within RR42_RS23705at 644.816 kb on + strand, within RR42_RS23705at 644.817 kb on - strand, within RR42_RS23705at 644.817 kb on - strand, within RR42_RS23705at 644.817 kb on - strand, within RR42_RS23705at 644.891 kb on + strand, within RR42_RS23705at 644.892 kb on - strand, within RR42_RS23705at 644.969 kb on + strand, within RR42_RS23705at 644.969 kb on + strand, within RR42_RS23705at 644.969 kb on + strand, within RR42_RS23705at 644.970 kb on - strand, within RR42_RS23705at 644.970 kb on - strand, within RR42_RS23705at 644.970 kb on - strand, within RR42_RS23705at 644.970 kb on - strand, within RR42_RS23705at 645.043 kb on - strand, within RR42_RS23705

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Per-strain Table

Position Strand Gene LocusTag Fraction adipate (C)
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642,146 + +0.9
642,146 + -0.1
642,147 - -1.3
642,161 + -0.9
642,162 - +0.2
642,272 + RR42_RS23695 0.17 +0.2
642,273 - RR42_RS23695 0.17 +1.6
642,362 + RR42_RS23695 0.28 -0.7
642,363 - RR42_RS23695 0.28 -1.5
642,456 - RR42_RS23695 0.40 -1.0
642,623 + RR42_RS23695 0.62 +1.2
642,623 + RR42_RS23695 0.62 +0.2
642,623 + RR42_RS23695 0.62 +0.5
642,624 - RR42_RS23695 0.62 +0.2
642,624 - RR42_RS23695 0.62 -0.1
642,625 + RR42_RS23695 0.62 -1.7
642,625 + RR42_RS23695 0.62 -1.7
642,625 + RR42_RS23695 0.62 -0.1
642,625 + RR42_RS23695 0.62 -1.9
642,625 + RR42_RS23695 0.62 -0.5
642,626 - RR42_RS23695 0.62 -0.0
642,626 - RR42_RS23695 0.62 +0.1
642,626 - RR42_RS23695 0.62 +0.7
642,626 - RR42_RS23695 0.62 +0.2
642,626 - RR42_RS23695 0.62 +0.0
642,626 - RR42_RS23695 0.62 -0.4
642,626 - RR42_RS23695 0.62 -0.1
642,824 + RR42_RS23695 0.87 -0.1
642,825 - RR42_RS23695 0.87 -0.1
642,825 - RR42_RS23695 0.87 +1.6
642,825 - RR42_RS23695 0.87 -0.9
642,839 + RR42_RS23695 0.89 -2.6
642,839 + RR42_RS23695 0.89 -1.3
642,839 + RR42_RS23695 0.89 +0.5
642,839 + RR42_RS23695 0.89 +0.6
642,842 + RR42_RS23695 0.90 +0.5
642,842 + RR42_RS23695 0.90 -0.2
642,911 + +0.4
642,920 + +0.5
642,931 - +0.7
643,032 - +0.3
643,032 - -0.1
643,090 + +0.7
643,171 + RR42_RS23700 0.13 -1.3
643,172 - RR42_RS23700 0.13 +1.1
643,172 - RR42_RS23700 0.13 -0.3
643,274 + RR42_RS23700 0.22 +0.3
643,274 + RR42_RS23700 0.22 -1.5
643,274 + RR42_RS23700 0.22 -2.0
643,274 + RR42_RS23700 0.22 -0.5
643,274 + RR42_RS23700 0.22 -0.7
643,274 + RR42_RS23700 0.22 -0.1
643,275 - RR42_RS23700 0.22 -0.0
643,275 - RR42_RS23700 0.22 -1.5
643,460 + RR42_RS23700 0.38 +0.8
643,460 + RR42_RS23700 0.38 -0.6
643,460 + RR42_RS23700 0.38 +0.8
643,460 + RR42_RS23700 0.38 -0.1
643,461 - RR42_RS23700 0.38 -0.5
643,767 + RR42_RS23700 0.65 -2.6
643,808 + RR42_RS23700 0.68 +0.2
643,808 + RR42_RS23700 0.68 -0.5
643,808 + RR42_RS23700 0.68 -0.7
643,808 + RR42_RS23700 0.68 -1.0
643,809 - RR42_RS23700 0.68 -1.1
643,809 - RR42_RS23700 0.68 +0.6
643,809 - RR42_RS23700 0.68 +1.1
644,001 - RR42_RS23700 0.85 -2.7
644,001 - RR42_RS23700 0.85 +0.6
644,229 - +0.2
644,396 + RR42_RS23705 0.10 +0.3
644,514 - RR42_RS23705 0.17 +0.7
644,648 + RR42_RS23705 0.26 +1.5
644,648 + RR42_RS23705 0.26 +0.1
644,649 - RR42_RS23705 0.26 -0.2
644,816 + RR42_RS23705 0.36 -0.2
644,816 + RR42_RS23705 0.36 -0.6
644,817 - RR42_RS23705 0.36 -0.3
644,817 - RR42_RS23705 0.36 -0.7
644,817 - RR42_RS23705 0.36 +1.0
644,891 + RR42_RS23705 0.40 -0.3
644,892 - RR42_RS23705 0.40 -0.9
644,969 + RR42_RS23705 0.45 +1.0
644,969 + RR42_RS23705 0.45 +0.5
644,969 + RR42_RS23705 0.45 +0.2
644,970 - RR42_RS23705 0.45 -0.6
644,970 - RR42_RS23705 0.45 -2.1
644,970 - RR42_RS23705 0.45 +0.7
644,970 - RR42_RS23705 0.45 -1.0
645,043 - RR42_RS23705 0.49 +0.5

Or see this region's nucleotide sequence