Experiment: adipate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS22160 and RR42_RS22165 are separated by 432 nucleotides RR42_RS22165 and RR42_RS22170 are separated by 73 nucleotides RR42_RS22170 and RR42_RS22175 are separated by 130 nucleotides
RR42_RS22160: RR42_RS22160 - amine dehydrogenase, at 309,683 to 310,828
_RS22160
RR42_RS22165: RR42_RS22165 - hypothetical protein, at 311,261 to 311,443
_RS22165
RR42_RS22170: RR42_RS22170 - translation initiation factor SUI1, at 311,517 to 311,879
_RS22170
RR42_RS22175: RR42_RS22175 - carboxyvinyl-carboxyphosphonate phosphorylmutase, at 312,010 to 312,876
_RS22175
Position (kb) 311
312 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 310.295 kb on + strand, within RR42_RS22160 at 310.295 kb on + strand, within RR42_RS22160 at 310.296 kb on - strand, within RR42_RS22160 at 310.296 kb on - strand, within RR42_RS22160 at 310.296 kb on - strand, within RR42_RS22160 at 310.392 kb on + strand, within RR42_RS22160 at 310.393 kb on - strand, within RR42_RS22160 at 310.503 kb on + strand, within RR42_RS22160 at 310.504 kb on - strand, within RR42_RS22160 at 310.504 kb on - strand, within RR42_RS22160 at 310.566 kb on + strand, within RR42_RS22160 at 310.566 kb on + strand, within RR42_RS22160 at 310.566 kb on + strand, within RR42_RS22160 at 310.566 kb on + strand, within RR42_RS22160 at 310.566 kb on + strand, within RR42_RS22160 at 310.566 kb on + strand, within RR42_RS22160 at 310.566 kb on + strand, within RR42_RS22160 at 310.567 kb on - strand, within RR42_RS22160 at 310.567 kb on - strand, within RR42_RS22160 at 310.567 kb on - strand, within RR42_RS22160 at 310.704 kb on + strand, within RR42_RS22160 at 310.705 kb on - strand, within RR42_RS22160 at 310.842 kb on - strand at 310.850 kb on + strand at 310.886 kb on + strand at 310.886 kb on + strand at 310.887 kb on - strand at 310.887 kb on - strand at 310.887 kb on - strand at 310.887 kb on - strand at 311.105 kb on - strand at 311.130 kb on + strand at 311.237 kb on + strand at 311.237 kb on + strand at 311.238 kb on - strand at 311.238 kb on - strand at 311.238 kb on - strand at 311.251 kb on + strand at 311.253 kb on + strand at 311.254 kb on - strand at 311.273 kb on + strand at 311.273 kb on + strand at 311.274 kb on - strand at 311.274 kb on - strand at 311.274 kb on - strand at 311.275 kb on + strand at 311.276 kb on - strand at 311.276 kb on - strand at 311.423 kb on + strand, within RR42_RS22165 at 311.424 kb on - strand, within RR42_RS22165 at 311.424 kb on - strand, within RR42_RS22165 at 311.845 kb on + strand at 311.846 kb on - strand at 311.931 kb on + strand at 311.932 kb on - strand at 311.932 kb on - strand at 312.020 kb on + strand at 312.137 kb on + strand, within RR42_RS22175 at 312.255 kb on + strand, within RR42_RS22175 at 312.255 kb on + strand, within RR42_RS22175 at 312.256 kb on - strand, within RR42_RS22175 at 312.362 kb on + strand, within RR42_RS22175 at 312.362 kb on + strand, within RR42_RS22175 at 312.362 kb on + strand, within RR42_RS22175 at 312.362 kb on + strand, within RR42_RS22175 at 312.363 kb on - strand, within RR42_RS22175 at 312.363 kb on - strand, within RR42_RS22175
Per-strain Table
Position Strand Gene LocusTag Fraction adipate (C) remove 310,295 + RR42_RS22160 0.53 -0.1 310,295 + RR42_RS22160 0.53 -0.2 310,296 - RR42_RS22160 0.53 +2.9 310,296 - RR42_RS22160 0.53 +0.4 310,296 - RR42_RS22160 0.53 -0.3 310,392 + RR42_RS22160 0.62 +0.2 310,393 - RR42_RS22160 0.62 +0.8 310,503 + RR42_RS22160 0.72 -1.0 310,504 - RR42_RS22160 0.72 -1.6 310,504 - RR42_RS22160 0.72 -0.6 310,566 + RR42_RS22160 0.77 -1.3 310,566 + RR42_RS22160 0.77 +1.5 310,566 + RR42_RS22160 0.77 +0.8 310,566 + RR42_RS22160 0.77 +0.7 310,566 + RR42_RS22160 0.77 -1.2 310,566 + RR42_RS22160 0.77 -0.5 310,566 + RR42_RS22160 0.77 -2.7 310,567 - RR42_RS22160 0.77 -0.0 310,567 - RR42_RS22160 0.77 -1.0 310,567 - RR42_RS22160 0.77 -0.7 310,704 + RR42_RS22160 0.89 -0.0 310,705 - RR42_RS22160 0.89 +0.7 310,842 - -0.7 310,850 + -0.4 310,886 + +0.3 310,886 + -0.1 310,887 - +0.9 310,887 - -0.0 310,887 - -0.2 310,887 - -0.3 311,105 - +1.1 311,130 + -0.7 311,237 + +0.0 311,237 + +1.5 311,238 - -0.3 311,238 - -0.9 311,238 - -1.0 311,251 + -0.3 311,253 + -0.4 311,254 - +0.5 311,273 + -0.9 311,273 + +0.5 311,274 - +0.7 311,274 - -0.9 311,274 - -0.7 311,275 + -0.9 311,276 - -0.7 311,276 - +0.3 311,423 + RR42_RS22165 0.89 -1.8 311,424 - RR42_RS22165 0.89 -2.3 311,424 - RR42_RS22165 0.89 -0.7 311,845 + -0.8 311,846 - -2.1 311,931 + +1.3 311,932 - -0.1 311,932 - -0.5 312,020 + -0.2 312,137 + RR42_RS22175 0.15 -0.2 312,255 + RR42_RS22175 0.28 +0.4 312,255 + RR42_RS22175 0.28 -0.6 312,256 - RR42_RS22175 0.28 +0.0 312,362 + RR42_RS22175 0.41 -0.1 312,362 + RR42_RS22175 0.41 -0.2 312,362 + RR42_RS22175 0.41 +1.1 312,362 + RR42_RS22175 0.41 -1.1 312,363 - RR42_RS22175 0.41 -0.2 312,363 - RR42_RS22175 0.41 -1.2
Or see this region's nucleotide sequence