Experiment: adipate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS21525 and RR42_RS21530 are separated by 47 nucleotides RR42_RS21530 and RR42_RS21535 are separated by 430 nucleotides
RR42_RS21525: RR42_RS21525 - hypothetical protein, at 156,713 to 157,810
_RS21525
RR42_RS21530: RR42_RS21530 - IclR family transcriptional regulator, at 157,858 to 158,706
_RS21530
RR42_RS21535: RR42_RS21535 - hypothetical protein, at 159,137 to 159,658
_RS21535
Position (kb) 157
158
159 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 157.046 kb on + strand, within RR42_RS21525 at 157.296 kb on + strand, within RR42_RS21525 at 157.297 kb on - strand, within RR42_RS21525 at 157.297 kb on - strand at 157.402 kb on + strand, within RR42_RS21525 at 157.402 kb on + strand, within RR42_RS21525 at 157.403 kb on - strand, within RR42_RS21525 at 157.403 kb on - strand, within RR42_RS21525 at 157.469 kb on + strand, within RR42_RS21525 at 157.470 kb on - strand, within RR42_RS21525 at 157.470 kb on - strand, within RR42_RS21525 at 157.750 kb on - strand at 157.750 kb on - strand at 157.793 kb on - strand at 157.939 kb on + strand at 157.940 kb on - strand at 158.054 kb on + strand, within RR42_RS21530 at 158.054 kb on + strand, within RR42_RS21530 at 158.054 kb on + strand, within RR42_RS21530 at 158.054 kb on + strand, within RR42_RS21530 at 158.054 kb on + strand, within RR42_RS21530 at 158.055 kb on - strand, within RR42_RS21530 at 158.055 kb on - strand, within RR42_RS21530 at 158.055 kb on - strand, within RR42_RS21530 at 158.055 kb on - strand, within RR42_RS21530 at 158.055 kb on - strand, within RR42_RS21530 at 158.210 kb on + strand, within RR42_RS21530 at 158.210 kb on + strand, within RR42_RS21530 at 158.280 kb on - strand, within RR42_RS21530 at 158.390 kb on + strand, within RR42_RS21530 at 158.390 kb on + strand, within RR42_RS21530 at 158.390 kb on + strand, within RR42_RS21530 at 158.390 kb on + strand, within RR42_RS21530 at 158.390 kb on + strand, within RR42_RS21530 at 158.390 kb on + strand, within RR42_RS21530 at 158.391 kb on - strand, within RR42_RS21530 at 158.391 kb on - strand, within RR42_RS21530 at 158.391 kb on - strand, within RR42_RS21530 at 158.475 kb on - strand, within RR42_RS21530 at 158.547 kb on + strand, within RR42_RS21530 at 158.748 kb on - strand at 158.906 kb on + strand at 158.906 kb on + strand at 158.906 kb on + strand at 158.907 kb on - strand at 158.907 kb on - strand at 158.927 kb on + strand at 158.928 kb on - strand at 158.928 kb on - strand at 159.642 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction adipate (C) remove 157,046 + RR42_RS21525 0.30 -0.2 157,296 + RR42_RS21525 0.53 +0.6 157,297 - RR42_RS21525 0.53 -0.6 157,297 - -1.0 157,402 + RR42_RS21525 0.63 -0.6 157,402 + RR42_RS21525 0.63 -1.2 157,403 - RR42_RS21525 0.63 -1.3 157,403 - RR42_RS21525 0.63 +0.7 157,469 + RR42_RS21525 0.69 -0.6 157,470 - RR42_RS21525 0.69 +0.0 157,470 - RR42_RS21525 0.69 +0.1 157,750 - +0.7 157,750 - +0.5 157,793 - -0.9 157,939 + -2.1 157,940 - -2.6 158,054 + RR42_RS21530 0.23 -0.5 158,054 + RR42_RS21530 0.23 -1.5 158,054 + RR42_RS21530 0.23 -1.7 158,054 + RR42_RS21530 0.23 -2.4 158,054 + RR42_RS21530 0.23 -1.7 158,055 - RR42_RS21530 0.23 -1.5 158,055 - RR42_RS21530 0.23 -1.3 158,055 - RR42_RS21530 0.23 -1.8 158,055 - RR42_RS21530 0.23 -3.0 158,055 - RR42_RS21530 0.23 -0.5 158,210 + RR42_RS21530 0.41 -1.2 158,210 + RR42_RS21530 0.41 -2.9 158,280 - RR42_RS21530 0.50 -1.9 158,390 + RR42_RS21530 0.63 -1.7 158,390 + RR42_RS21530 0.63 -3.1 158,390 + RR42_RS21530 0.63 -1.6 158,390 + RR42_RS21530 0.63 -0.0 158,390 + RR42_RS21530 0.63 -3.0 158,390 + RR42_RS21530 0.63 -0.8 158,391 - RR42_RS21530 0.63 +1.5 158,391 - RR42_RS21530 0.63 -1.3 158,391 - RR42_RS21530 0.63 -1.9 158,475 - RR42_RS21530 0.73 -2.2 158,547 + RR42_RS21530 0.81 -1.7 158,748 - -1.2 158,906 + -1.3 158,906 + -1.2 158,906 + -1.0 158,907 - -2.3 158,907 - -0.6 158,927 + -0.3 158,928 - -1.1 158,928 - -2.6 159,642 - -1.0
Or see this region's nucleotide sequence