Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS21425

Experiment: adipate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS21420 and RR42_RS21425 are separated by 149 nucleotidesRR42_RS21425 and RR42_RS21430 are separated by 12 nucleotides RR42_RS21420: RR42_RS21420 - acyl-CoA dehydrogenase, at 134,799 to 135,956 _RS21420 RR42_RS21425: RR42_RS21425 - hypothetical protein, at 136,106 to 136,963 _RS21425 RR42_RS21430: RR42_RS21430 - alpha-ketoglutarate permease, at 136,976 to 138,286 _RS21430 Position (kb) 136 137Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 135.123 kb on + strand, within RR42_RS21420at 135.123 kb on + strand, within RR42_RS21420at 135.237 kb on + strand, within RR42_RS21420at 135.237 kb on + strand, within RR42_RS21420at 135.238 kb on - strand, within RR42_RS21420at 135.238 kb on - strand, within RR42_RS21420at 135.293 kb on + strand, within RR42_RS21420at 135.530 kb on + strand, within RR42_RS21420at 135.531 kb on - strand, within RR42_RS21420at 135.570 kb on - strand, within RR42_RS21420at 135.585 kb on + strand, within RR42_RS21420at 135.586 kb on - strand, within RR42_RS21420at 135.586 kb on - strand, within RR42_RS21420at 135.656 kb on + strand, within RR42_RS21420at 135.672 kb on + strand, within RR42_RS21420at 135.840 kb on + strand, within RR42_RS21420at 135.840 kb on + strand, within RR42_RS21420at 135.841 kb on - strandat 135.842 kb on + strandat 135.842 kb on + strandat 135.843 kb on - strandat 135.853 kb on - strandat 135.881 kb on - strandat 135.881 kb on - strandat 135.898 kb on - strandat 136.020 kb on + strandat 136.139 kb on + strandat 136.289 kb on + strand, within RR42_RS21425at 136.289 kb on + strand, within RR42_RS21425at 136.290 kb on - strand, within RR42_RS21425at 136.404 kb on - strand, within RR42_RS21425at 136.436 kb on + strand, within RR42_RS21425at 136.481 kb on + strand, within RR42_RS21425at 136.481 kb on + strand, within RR42_RS21425at 136.481 kb on + strand, within RR42_RS21425at 136.481 kb on + strand, within RR42_RS21425at 136.523 kb on + strand, within RR42_RS21425at 136.523 kb on + strand, within RR42_RS21425at 136.589 kb on + strand, within RR42_RS21425at 136.590 kb on - strand, within RR42_RS21425at 136.590 kb on - strand, within RR42_RS21425at 136.590 kb on - strand, within RR42_RS21425at 136.730 kb on + strand, within RR42_RS21425at 136.730 kb on + strand, within RR42_RS21425at 136.731 kb on - strand, within RR42_RS21425at 136.731 kb on - strand, within RR42_RS21425at 136.732 kb on + strand, within RR42_RS21425at 136.732 kb on + strand, within RR42_RS21425at 136.733 kb on - strand, within RR42_RS21425at 136.995 kb on + strandat 136.996 kb on - strandat 137.059 kb on - strandat 137.064 kb on + strandat 137.065 kb on - strandat 137.065 kb on - strandat 137.065 kb on - strandat 137.065 kb on - strandat 137.110 kb on - strand, within RR42_RS21430at 137.148 kb on + strand, within RR42_RS21430at 137.148 kb on + strand, within RR42_RS21430at 137.148 kb on + strand, within RR42_RS21430at 137.149 kb on - strand, within RR42_RS21430at 137.223 kb on + strand, within RR42_RS21430at 137.224 kb on - strand, within RR42_RS21430at 137.224 kb on - strand, within RR42_RS21430at 137.347 kb on + strand, within RR42_RS21430at 137.347 kb on + strand, within RR42_RS21430at 137.348 kb on - strand, within RR42_RS21430at 137.348 kb on - strand, within RR42_RS21430at 137.348 kb on - strand, within RR42_RS21430at 137.406 kb on + strand, within RR42_RS21430at 137.406 kb on + strand, within RR42_RS21430at 137.406 kb on + strand, within RR42_RS21430at 137.406 kb on + strand, within RR42_RS21430at 137.407 kb on - strand, within RR42_RS21430at 137.407 kb on - strand, within RR42_RS21430at 137.407 kb on - strand, within RR42_RS21430at 137.407 kb on - strand, within RR42_RS21430at 137.407 kb on - strand, within RR42_RS21430at 137.407 kb on - strand, within RR42_RS21430at 137.407 kb on - strand, within RR42_RS21430at 137.433 kb on + strand, within RR42_RS21430at 137.433 kb on + strand, within RR42_RS21430at 137.433 kb on + strand, within RR42_RS21430at 137.434 kb on - strand, within RR42_RS21430at 137.434 kb on - strand, within RR42_RS21430at 137.485 kb on + strand, within RR42_RS21430at 137.485 kb on + strand, within RR42_RS21430at 137.486 kb on - strand, within RR42_RS21430at 137.486 kb on - strand, within RR42_RS21430at 137.487 kb on + strand, within RR42_RS21430at 137.487 kb on + strand, within RR42_RS21430at 137.487 kb on + strand, within RR42_RS21430at 137.487 kb on + strand, within RR42_RS21430at 137.487 kb on + strand, within RR42_RS21430at 137.487 kb on + strand, within RR42_RS21430at 137.487 kb on + strand, within RR42_RS21430at 137.487 kb on + strand, within RR42_RS21430at 137.488 kb on - strand, within RR42_RS21430at 137.488 kb on - strand, within RR42_RS21430at 137.488 kb on - strand, within RR42_RS21430at 137.488 kb on - strand, within RR42_RS21430at 137.488 kb on - strand, within RR42_RS21430at 137.500 kb on + strand, within RR42_RS21430at 137.502 kb on + strand, within RR42_RS21430at 137.503 kb on - strand, within RR42_RS21430at 137.503 kb on - strand, within RR42_RS21430at 137.527 kb on + strand, within RR42_RS21430at 137.527 kb on + strand, within RR42_RS21430at 137.530 kb on - strand, within RR42_RS21430at 137.557 kb on + strand, within RR42_RS21430at 137.557 kb on + strand, within RR42_RS21430at 137.557 kb on + strand, within RR42_RS21430at 137.558 kb on - strand, within RR42_RS21430at 137.558 kb on - strand, within RR42_RS21430at 137.839 kb on + strand, within RR42_RS21430at 137.839 kb on + strand, within RR42_RS21430at 137.839 kb on + strand, within RR42_RS21430at 137.839 kb on + strand, within RR42_RS21430at 137.839 kb on + strand, within RR42_RS21430at 137.839 kb on + strand, within RR42_RS21430at 137.840 kb on - strand, within RR42_RS21430at 137.840 kb on - strand, within RR42_RS21430at 137.840 kb on - strand, within RR42_RS21430at 137.840 kb on - strand, within RR42_RS21430at 137.841 kb on + strand, within RR42_RS21430at 137.841 kb on + strand, within RR42_RS21430at 137.841 kb on + strand, within RR42_RS21430at 137.841 kb on + strand, within RR42_RS21430at 137.841 kb on + strand, within RR42_RS21430at 137.841 kb on + strand, within RR42_RS21430at 137.842 kb on - strand, within RR42_RS21430at 137.842 kb on - strand, within RR42_RS21430at 137.842 kb on - strand, within RR42_RS21430at 137.842 kb on - strand, within RR42_RS21430at 137.842 kb on - strand, within RR42_RS21430at 137.860 kb on - strand, within RR42_RS21430at 137.937 kb on + strand, within RR42_RS21430at 137.937 kb on + strand, within RR42_RS21430at 137.938 kb on - strand, within RR42_RS21430at 137.938 kb on - strand, within RR42_RS21430

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Per-strain Table

Position Strand Gene LocusTag Fraction adipate (C)
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135,123 + RR42_RS21420 0.28 -4.4
135,123 + RR42_RS21420 0.28 -2.0
135,237 + RR42_RS21420 0.38 -1.9
135,237 + RR42_RS21420 0.38 -3.6
135,238 - RR42_RS21420 0.38 +0.5
135,238 - RR42_RS21420 0.38 -4.1
135,293 + RR42_RS21420 0.43 -2.7
135,530 + RR42_RS21420 0.63 -3.7
135,531 - RR42_RS21420 0.63 -2.7
135,570 - RR42_RS21420 0.67 -2.3
135,585 + RR42_RS21420 0.68 -3.3
135,586 - RR42_RS21420 0.68 -0.8
135,586 - RR42_RS21420 0.68 -3.0
135,656 + RR42_RS21420 0.74 -3.0
135,672 + RR42_RS21420 0.75 -3.0
135,840 + RR42_RS21420 0.90 -4.3
135,840 + RR42_RS21420 0.90 -1.7
135,841 - -2.6
135,842 + -3.2
135,842 + -3.5
135,843 - -0.8
135,853 - -4.2
135,881 - -4.1
135,881 - -0.5
135,898 - -3.6
136,020 + +0.9
136,139 + -1.4
136,289 + RR42_RS21425 0.21 -2.2
136,289 + RR42_RS21425 0.21 -1.1
136,290 - RR42_RS21425 0.21 -0.4
136,404 - RR42_RS21425 0.35 -1.1
136,436 + RR42_RS21425 0.38 +0.8
136,481 + RR42_RS21425 0.44 +1.5
136,481 + RR42_RS21425 0.44 -2.3
136,481 + RR42_RS21425 0.44 -0.6
136,481 + RR42_RS21425 0.44 -1.3
136,523 + RR42_RS21425 0.49 -1.9
136,523 + RR42_RS21425 0.49 -2.0
136,589 + RR42_RS21425 0.56 -1.6
136,590 - RR42_RS21425 0.56 -2.5
136,590 - RR42_RS21425 0.56 -0.5
136,590 - RR42_RS21425 0.56 -2.6
136,730 + RR42_RS21425 0.73 -3.6
136,730 + RR42_RS21425 0.73 -0.5
136,731 - RR42_RS21425 0.73 -1.9
136,731 - RR42_RS21425 0.73 +1.0
136,732 + RR42_RS21425 0.73 -2.7
136,732 + RR42_RS21425 0.73 +1.0
136,733 - RR42_RS21425 0.73 -1.6
136,995 + -2.5
136,996 - -1.6
137,059 - -0.1
137,064 + -1.1
137,065 - -1.7
137,065 - -1.0
137,065 - -2.8
137,065 - -2.0
137,110 - RR42_RS21430 0.10 -1.7
137,148 + RR42_RS21430 0.13 -1.9
137,148 + RR42_RS21430 0.13 -0.7
137,148 + RR42_RS21430 0.13 -1.5
137,149 - RR42_RS21430 0.13 -1.0
137,223 + RR42_RS21430 0.19 +2.1
137,224 - RR42_RS21430 0.19 -2.0
137,224 - RR42_RS21430 0.19 -1.6
137,347 + RR42_RS21430 0.28 +0.2
137,347 + RR42_RS21430 0.28 +0.4
137,348 - RR42_RS21430 0.28 -2.4
137,348 - RR42_RS21430 0.28 -1.9
137,348 - RR42_RS21430 0.28 -0.6
137,406 + RR42_RS21430 0.33 -2.7
137,406 + RR42_RS21430 0.33 -2.7
137,406 + RR42_RS21430 0.33 -0.8
137,406 + RR42_RS21430 0.33 +0.7
137,407 - RR42_RS21430 0.33 -2.0
137,407 - RR42_RS21430 0.33 -1.0
137,407 - RR42_RS21430 0.33 +0.4
137,407 - RR42_RS21430 0.33 -2.6
137,407 - RR42_RS21430 0.33 -0.5
137,407 - RR42_RS21430 0.33 -2.2
137,407 - RR42_RS21430 0.33 -1.0
137,433 + RR42_RS21430 0.35 +0.5
137,433 + RR42_RS21430 0.35 -1.0
137,433 + RR42_RS21430 0.35 -0.4
137,434 - RR42_RS21430 0.35 -3.0
137,434 - RR42_RS21430 0.35 -0.8
137,485 + RR42_RS21430 0.39 -0.4
137,485 + RR42_RS21430 0.39 -1.1
137,486 - RR42_RS21430 0.39 +1.5
137,486 - RR42_RS21430 0.39 -3.3
137,487 + RR42_RS21430 0.39 -1.8
137,487 + RR42_RS21430 0.39 -1.4
137,487 + RR42_RS21430 0.39 -1.6
137,487 + RR42_RS21430 0.39 -1.9
137,487 + RR42_RS21430 0.39 -1.5
137,487 + RR42_RS21430 0.39 -1.9
137,487 + RR42_RS21430 0.39 -0.5
137,487 + RR42_RS21430 0.39 +0.5
137,488 - RR42_RS21430 0.39 -1.6
137,488 - RR42_RS21430 0.39 -1.4
137,488 - RR42_RS21430 0.39 -0.5
137,488 - RR42_RS21430 0.39 -0.5
137,488 - RR42_RS21430 0.39 -2.4
137,500 + RR42_RS21430 0.40 -1.8
137,502 + RR42_RS21430 0.40 -2.9
137,503 - RR42_RS21430 0.40 -0.0
137,503 - RR42_RS21430 0.40 -2.0
137,527 + RR42_RS21430 0.42 -2.7
137,527 + RR42_RS21430 0.42 +0.1
137,530 - RR42_RS21430 0.42 -0.5
137,557 + RR42_RS21430 0.44 -1.8
137,557 + RR42_RS21430 0.44 -1.9
137,557 + RR42_RS21430 0.44 -0.8
137,558 - RR42_RS21430 0.44 -4.2
137,558 - RR42_RS21430 0.44 -1.9
137,839 + RR42_RS21430 0.66 -1.4
137,839 + RR42_RS21430 0.66 -1.5
137,839 + RR42_RS21430 0.66 -3.5
137,839 + RR42_RS21430 0.66 +1.5
137,839 + RR42_RS21430 0.66 -0.5
137,839 + RR42_RS21430 0.66 -1.7
137,840 - RR42_RS21430 0.66 -3.9
137,840 - RR42_RS21430 0.66 -2.4
137,840 - RR42_RS21430 0.66 -0.3
137,840 - RR42_RS21430 0.66 -1.7
137,841 + RR42_RS21430 0.66 -1.9
137,841 + RR42_RS21430 0.66 -1.7
137,841 + RR42_RS21430 0.66 -2.8
137,841 + RR42_RS21430 0.66 -2.4
137,841 + RR42_RS21430 0.66 +0.5
137,841 + RR42_RS21430 0.66 -2.2
137,842 - RR42_RS21430 0.66 -1.2
137,842 - RR42_RS21430 0.66 -2.9
137,842 - RR42_RS21430 0.66 -0.8
137,842 - RR42_RS21430 0.66 -1.2
137,842 - RR42_RS21430 0.66 -1.2
137,860 - RR42_RS21430 0.67 -0.8
137,937 + RR42_RS21430 0.73 -1.5
137,937 + RR42_RS21430 0.73 -2.5
137,938 - RR42_RS21430 0.73 +1.2
137,938 - RR42_RS21430 0.73 -2.3

Or see this region's nucleotide sequence