Experiment: adipate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS21245 and RR42_RS21250 are separated by 247 nucleotides RR42_RS21250 and RR42_RS21255 are separated by 268 nucleotides RR42_RS21255 and RR42_RS21260 are separated by 118 nucleotides
RR42_RS21245: RR42_RS21245 - nicotinate-nucleotide pyrophosphorylase, at 92,417 to 93,253
_RS21245
RR42_RS21250: RR42_RS21250 - antibiotic biosynthesis monooxygenase, at 93,501 to 93,800
_RS21250
RR42_RS21255: RR42_RS21255 - LysR family transcriptional regulator, at 94,069 to 94,947
_RS21255
RR42_RS21260: RR42_RS21260 - isovaleryl-CoA dehydrogenase, at 95,066 to 96,862
_RS21260
Position (kb) 94
95 Strain fitness (log2 ratio) -1
0
1
2
3
4
5
6
7 at 93.102 kb on - strand, within RR42_RS21245 at 93.102 kb on - strand, within RR42_RS21245 at 93.102 kb on - strand, within RR42_RS21245 at 93.102 kb on - strand, within RR42_RS21245 at 93.137 kb on - strand, within RR42_RS21245 at 93.138 kb on + strand, within RR42_RS21245 at 93.138 kb on + strand, within RR42_RS21245 at 93.138 kb on + strand, within RR42_RS21245 at 93.139 kb on - strand, within RR42_RS21245 at 93.139 kb on - strand, within RR42_RS21245 at 93.139 kb on - strand, within RR42_RS21245 at 93.249 kb on + strand at 93.250 kb on - strand at 93.250 kb on - strand at 93.250 kb on - strand at 93.324 kb on - strand at 93.350 kb on + strand at 93.396 kb on - strand at 93.431 kb on + strand at 93.431 kb on + strand at 93.431 kb on + strand at 93.431 kb on + strand at 93.431 kb on + strand at 93.432 kb on - strand at 93.432 kb on - strand at 93.432 kb on - strand at 93.891 kb on - strand at 93.925 kb on + strand at 93.926 kb on + strand at 93.969 kb on + strand at 93.970 kb on - strand at 94.142 kb on + strand at 94.142 kb on + strand at 94.143 kb on - strand at 94.143 kb on - strand at 94.143 kb on - strand at 94.143 kb on - strand at 94.301 kb on + strand, within RR42_RS21255 at 94.340 kb on + strand, within RR42_RS21255 at 94.340 kb on + strand, within RR42_RS21255 at 94.341 kb on - strand, within RR42_RS21255 at 94.344 kb on - strand, within RR42_RS21255 at 94.471 kb on + strand, within RR42_RS21255 at 94.640 kb on + strand, within RR42_RS21255 at 94.641 kb on - strand, within RR42_RS21255 at 94.842 kb on + strand, within RR42_RS21255 at 94.842 kb on + strand, within RR42_RS21255 at 94.925 kb on + strand at 94.962 kb on + strand at 95.010 kb on + strand at 95.013 kb on + strand at 95.013 kb on + strand at 95.013 kb on + strand at 95.014 kb on - strand at 95.027 kb on + strand at 95.060 kb on + strand at 95.061 kb on - strand at 95.061 kb on - strand at 95.198 kb on + strand at 95.198 kb on + strand at 95.199 kb on - strand at 95.287 kb on + strand, within RR42_RS21260 at 95.287 kb on + strand, within RR42_RS21260 at 95.369 kb on + strand, within RR42_RS21260 at 95.369 kb on + strand, within RR42_RS21260 at 95.369 kb on + strand, within RR42_RS21260 at 95.474 kb on + strand, within RR42_RS21260 at 95.475 kb on - strand, within RR42_RS21260 at 95.475 kb on - strand, within RR42_RS21260 at 95.486 kb on + strand, within RR42_RS21260 at 95.486 kb on + strand, within RR42_RS21260 at 95.486 kb on + strand, within RR42_RS21260 at 95.486 kb on + strand, within RR42_RS21260 at 95.486 kb on + strand, within RR42_RS21260 at 95.630 kb on + strand, within RR42_RS21260 at 95.888 kb on + strand, within RR42_RS21260 at 95.888 kb on + strand, within RR42_RS21260 at 95.888 kb on + strand, within RR42_RS21260
Per-strain Table
Position Strand Gene LocusTag Fraction adipate (C) remove 93,102 - RR42_RS21245 0.82 -1.7 93,102 - RR42_RS21245 0.82 -0.6 93,102 - RR42_RS21245 0.82 -0.2 93,102 - RR42_RS21245 0.82 -0.0 93,137 - RR42_RS21245 0.86 -0.3 93,138 + RR42_RS21245 0.86 +0.5 93,138 + RR42_RS21245 0.86 -0.3 93,138 + RR42_RS21245 0.86 -1.2 93,139 - RR42_RS21245 0.86 +0.3 93,139 - RR42_RS21245 0.86 +1.1 93,139 - RR42_RS21245 0.86 -0.6 93,249 + -0.0 93,250 - -0.4 93,250 - +0.1 93,250 - +1.5 93,324 - +0.4 93,350 + -1.7 93,396 - -0.7 93,431 + -0.3 93,431 + -1.0 93,431 + +0.5 93,431 + -0.0 93,431 + -0.3 93,432 - -0.4 93,432 - -0.4 93,432 - -0.5 93,891 - -1.0 93,925 + +1.6 93,926 + +0.5 93,969 + +1.1 93,970 - +0.1 94,142 + +3.7 94,142 + +2.0 94,143 - +0.2 94,143 - +1.1 94,143 - +0.7 94,143 - -0.2 94,301 + RR42_RS21255 0.26 +5.4 94,340 + RR42_RS21255 0.31 +3.0 94,340 + RR42_RS21255 0.31 +4.9 94,341 - RR42_RS21255 0.31 +0.7 94,344 - RR42_RS21255 0.31 +0.0 94,471 + RR42_RS21255 0.46 +4.8 94,640 + RR42_RS21255 0.65 +4.8 94,641 - RR42_RS21255 0.65 +0.4 94,842 + RR42_RS21255 0.88 +5.9 94,842 + RR42_RS21255 0.88 +3.4 94,925 + +6.9 94,962 + +6.0 95,010 + +3.7 95,013 + +6.1 95,013 + +4.7 95,013 + +5.3 95,014 - +1.5 95,027 + +2.5 95,060 + +0.9 95,061 - -1.2 95,061 - -1.0 95,198 + -0.6 95,198 + +1.8 95,199 - -0.6 95,287 + RR42_RS21260 0.12 -0.8 95,287 + RR42_RS21260 0.12 +0.6 95,369 + RR42_RS21260 0.17 -1.6 95,369 + RR42_RS21260 0.17 +0.9 95,369 + RR42_RS21260 0.17 +0.7 95,474 + RR42_RS21260 0.23 -1.0 95,475 - RR42_RS21260 0.23 +1.1 95,475 - RR42_RS21260 0.23 +0.0 95,486 + RR42_RS21260 0.23 +1.7 95,486 + RR42_RS21260 0.23 +3.9 95,486 + RR42_RS21260 0.23 +0.6 95,486 + RR42_RS21260 0.23 +1.7 95,486 + RR42_RS21260 0.23 +1.3 95,630 + RR42_RS21260 0.31 +1.4 95,888 + RR42_RS21260 0.46 -0.1 95,888 + RR42_RS21260 0.46 -0.0 95,888 + RR42_RS21260 0.46 +0.6
Or see this region's nucleotide sequence