Experiment: adipate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS21090 and RR42_RS21095 are separated by 50 nucleotides RR42_RS21095 and RR42_RS21100 are separated by 661 nucleotides
RR42_RS21090: RR42_RS21090 - MFS transporter, at 56,622 to 57,650
_RS21090
RR42_RS21095: RR42_RS21095 - GntR family transcriptional regulator, at 57,701 to 58,480
_RS21095
RR42_RS21100: RR42_RS21100 - hypothetical protein, at 59,142 to 60,599
_RS21100
Position (kb) 57
58
59 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 56.975 kb on + strand, within RR42_RS21090 at 57.040 kb on + strand, within RR42_RS21090 at 57.040 kb on + strand, within RR42_RS21090 at 57.040 kb on + strand, within RR42_RS21090 at 57.040 kb on + strand, within RR42_RS21090 at 57.041 kb on - strand, within RR42_RS21090 at 57.058 kb on + strand, within RR42_RS21090 at 57.058 kb on + strand, within RR42_RS21090 at 57.058 kb on + strand, within RR42_RS21090 at 57.058 kb on + strand, within RR42_RS21090 at 57.058 kb on + strand, within RR42_RS21090 at 57.058 kb on + strand, within RR42_RS21090 at 57.058 kb on + strand, within RR42_RS21090 at 57.059 kb on - strand, within RR42_RS21090 at 57.059 kb on - strand, within RR42_RS21090 at 57.280 kb on + strand, within RR42_RS21090 at 57.280 kb on + strand, within RR42_RS21090 at 57.280 kb on + strand, within RR42_RS21090 at 57.280 kb on + strand, within RR42_RS21090 at 57.281 kb on - strand, within RR42_RS21090 at 57.326 kb on + strand, within RR42_RS21090 at 57.326 kb on + strand, within RR42_RS21090 at 57.327 kb on - strand, within RR42_RS21090 at 57.327 kb on - strand, within RR42_RS21090 at 57.686 kb on + strand at 57.687 kb on - strand at 57.703 kb on - strand at 57.784 kb on - strand, within RR42_RS21095 at 58.044 kb on + strand, within RR42_RS21095 at 58.044 kb on + strand, within RR42_RS21095 at 58.044 kb on + strand, within RR42_RS21095 at 58.044 kb on + strand, within RR42_RS21095 at 58.044 kb on + strand, within RR42_RS21095 at 58.045 kb on - strand, within RR42_RS21095 at 58.045 kb on - strand, within RR42_RS21095 at 58.045 kb on - strand, within RR42_RS21095 at 58.045 kb on - strand, within RR42_RS21095 at 58.434 kb on - strand at 58.436 kb on + strand at 58.436 kb on + strand at 58.437 kb on - strand at 58.437 kb on - strand at 58.443 kb on + strand at 58.443 kb on + strand at 58.456 kb on - strand at 58.521 kb on - strand at 58.530 kb on + strand at 58.531 kb on - strand at 58.542 kb on - strand at 58.548 kb on + strand at 58.571 kb on + strand at 58.571 kb on + strand at 58.572 kb on - strand at 58.574 kb on + strand at 58.617 kb on + strand at 58.617 kb on + strand at 58.648 kb on - strand at 58.775 kb on - strand at 58.948 kb on + strand at 58.949 kb on - strand at 58.976 kb on - strand at 59.029 kb on - strand at 59.029 kb on - strand at 59.141 kb on + strand at 59.142 kb on - strand at 59.142 kb on - strand at 59.155 kb on + strand at 59.155 kb on + strand at 59.155 kb on + strand at 59.155 kb on + strand at 59.155 kb on + strand at 59.156 kb on - strand at 59.366 kb on + strand, within RR42_RS21100 at 59.367 kb on - strand, within RR42_RS21100 at 59.367 kb on - strand, within RR42_RS21100
Per-strain Table
Position Strand Gene LocusTag Fraction adipate (C) remove 56,975 + RR42_RS21090 0.34 +1.3 57,040 + RR42_RS21090 0.41 -0.5 57,040 + RR42_RS21090 0.41 +0.2 57,040 + RR42_RS21090 0.41 -1.0 57,040 + RR42_RS21090 0.41 -0.1 57,041 - RR42_RS21090 0.41 +0.1 57,058 + RR42_RS21090 0.42 +1.2 57,058 + RR42_RS21090 0.42 +0.7 57,058 + RR42_RS21090 0.42 -0.0 57,058 + RR42_RS21090 0.42 +0.0 57,058 + RR42_RS21090 0.42 -0.2 57,058 + RR42_RS21090 0.42 +0.4 57,058 + RR42_RS21090 0.42 +0.6 57,059 - RR42_RS21090 0.42 +1.6 57,059 - RR42_RS21090 0.42 -1.8 57,280 + RR42_RS21090 0.64 -0.4 57,280 + RR42_RS21090 0.64 -1.3 57,280 + RR42_RS21090 0.64 -0.1 57,280 + RR42_RS21090 0.64 +1.2 57,281 - RR42_RS21090 0.64 -0.6 57,326 + RR42_RS21090 0.68 -0.6 57,326 + RR42_RS21090 0.68 -1.5 57,327 - RR42_RS21090 0.69 +0.4 57,327 - RR42_RS21090 0.69 +0.3 57,686 + -1.6 57,687 - +0.1 57,703 - +1.5 57,784 - RR42_RS21095 0.11 +0.2 58,044 + RR42_RS21095 0.44 +1.1 58,044 + RR42_RS21095 0.44 +0.1 58,044 + RR42_RS21095 0.44 +0.5 58,044 + RR42_RS21095 0.44 -0.9 58,044 + RR42_RS21095 0.44 -1.6 58,045 - RR42_RS21095 0.44 +0.5 58,045 - RR42_RS21095 0.44 +0.4 58,045 - RR42_RS21095 0.44 -1.9 58,045 - RR42_RS21095 0.44 -2.0 58,434 - -0.0 58,436 + -1.1 58,436 + -0.1 58,437 - -0.6 58,437 - +2.5 58,443 + +1.0 58,443 + -1.6 58,456 - -1.8 58,521 - -1.4 58,530 + -0.5 58,531 - -1.7 58,542 - -2.1 58,548 + -0.1 58,571 + -0.3 58,571 + +0.2 58,572 - -2.5 58,574 + -0.8 58,617 + +1.2 58,617 + -0.5 58,648 - -3.3 58,775 - -1.8 58,948 + -1.9 58,949 - +0.3 58,976 - -1.6 59,029 - -1.7 59,029 - -1.4 59,141 + -0.6 59,142 - -1.9 59,142 - -0.1 59,155 + -0.1 59,155 + +0.3 59,155 + -0.2 59,155 + -1.6 59,155 + +1.1 59,156 - -0.8 59,366 + RR42_RS21100 0.15 -0.2 59,367 - RR42_RS21100 0.15 -0.6 59,367 - RR42_RS21100 0.15 +0.5
Or see this region's nucleotide sequence