Experiment: adipate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS19505 and RR42_RS19510 are separated by 14 nucleotides RR42_RS19510 and RR42_RS19515 overlap by 1 nucleotides RR42_RS19515 and RR42_RS19520 are separated by 53 nucleotides
RR42_RS19505: RR42_RS19505 - general secretion pathway protein GspL, at 4,210,744 to 4,212,153
_RS19505
RR42_RS19510: RR42_RS19510 - general secretion pathway protein GspM, at 4,212,168 to 4,212,794
_RS19510
RR42_RS19515: RR42_RS19515 - general secretion pathway protein GspN, at 4,212,794 to 4,213,633
_RS19515
RR42_RS19520: RR42_RS19520 - general secretion pathway protein GspD, at 4,213,687 to 4,216,116
_RS19520
Position (kb) 4212
4213
4214 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 4212.084 kb on + strand at 4212.384 kb on + strand, within RR42_RS19510 at 4212.717 kb on + strand, within RR42_RS19510 at 4212.718 kb on - strand, within RR42_RS19510 at 4212.718 kb on - strand, within RR42_RS19510 at 4212.718 kb on - strand, within RR42_RS19510 at 4213.246 kb on + strand, within RR42_RS19515 at 4213.369 kb on - strand, within RR42_RS19515 at 4213.383 kb on + strand, within RR42_RS19515 at 4213.384 kb on - strand, within RR42_RS19515 at 4213.384 kb on - strand, within RR42_RS19515 at 4213.384 kb on - strand, within RR42_RS19515 at 4213.384 kb on - strand, within RR42_RS19515 at 4213.384 kb on - strand, within RR42_RS19515 at 4213.471 kb on + strand, within RR42_RS19515 at 4213.471 kb on + strand, within RR42_RS19515 at 4213.472 kb on - strand, within RR42_RS19515 at 4213.472 kb on - strand, within RR42_RS19515 at 4213.585 kb on - strand at 4213.585 kb on - strand at 4213.687 kb on - strand at 4213.748 kb on + strand at 4213.748 kb on + strand at 4214.038 kb on + strand, within RR42_RS19520 at 4214.039 kb on - strand, within RR42_RS19520 at 4214.039 kb on - strand, within RR42_RS19520 at 4214.039 kb on - strand, within RR42_RS19520 at 4214.072 kb on + strand, within RR42_RS19520 at 4214.072 kb on + strand, within RR42_RS19520 at 4214.072 kb on + strand, within RR42_RS19520 at 4214.073 kb on - strand, within RR42_RS19520 at 4214.073 kb on - strand, within RR42_RS19520 at 4214.173 kb on + strand, within RR42_RS19520 at 4214.173 kb on + strand, within RR42_RS19520 at 4214.173 kb on + strand, within RR42_RS19520 at 4214.173 kb on + strand, within RR42_RS19520 at 4214.173 kb on + strand, within RR42_RS19520 at 4214.173 kb on + strand, within RR42_RS19520 at 4214.173 kb on + strand, within RR42_RS19520 at 4214.174 kb on - strand, within RR42_RS19520 at 4214.174 kb on - strand, within RR42_RS19520 at 4214.174 kb on - strand, within RR42_RS19520 at 4214.174 kb on - strand, within RR42_RS19520 at 4214.174 kb on - strand, within RR42_RS19520 at 4214.275 kb on + strand, within RR42_RS19520 at 4214.275 kb on + strand, within RR42_RS19520 at 4214.276 kb on - strand, within RR42_RS19520 at 4214.276 kb on - strand, within RR42_RS19520 at 4214.276 kb on - strand, within RR42_RS19520 at 4214.276 kb on - strand, within RR42_RS19520 at 4214.572 kb on + strand, within RR42_RS19520 at 4214.573 kb on - strand, within RR42_RS19520 at 4214.589 kb on + strand, within RR42_RS19520 at 4214.589 kb on + strand, within RR42_RS19520 at 4214.590 kb on - strand, within RR42_RS19520 at 4214.590 kb on - strand, within RR42_RS19520 at 4214.590 kb on - strand, within RR42_RS19520
Per-strain Table
Position Strand Gene LocusTag Fraction adipate (C) remove 4,212,084 + +0.6 4,212,384 + RR42_RS19510 0.34 -0.9 4,212,717 + RR42_RS19510 0.88 -0.7 4,212,718 - RR42_RS19510 0.88 -1.8 4,212,718 - RR42_RS19510 0.88 -1.6 4,212,718 - RR42_RS19510 0.88 -2.6 4,213,246 + RR42_RS19515 0.54 -1.3 4,213,369 - RR42_RS19515 0.68 -1.1 4,213,383 + RR42_RS19515 0.70 -0.5 4,213,384 - RR42_RS19515 0.70 -0.3 4,213,384 - RR42_RS19515 0.70 -2.9 4,213,384 - RR42_RS19515 0.70 -1.7 4,213,384 - RR42_RS19515 0.70 -0.4 4,213,384 - RR42_RS19515 0.70 -0.9 4,213,471 + RR42_RS19515 0.81 -0.6 4,213,471 + RR42_RS19515 0.81 +1.3 4,213,472 - RR42_RS19515 0.81 -1.4 4,213,472 - RR42_RS19515 0.81 -0.4 4,213,585 - -0.7 4,213,585 - -1.8 4,213,687 - -2.5 4,213,748 + +0.2 4,213,748 + -1.0 4,214,038 + RR42_RS19520 0.14 -0.7 4,214,039 - RR42_RS19520 0.14 -0.8 4,214,039 - RR42_RS19520 0.14 -1.4 4,214,039 - RR42_RS19520 0.14 -3.3 4,214,072 + RR42_RS19520 0.16 +0.2 4,214,072 + RR42_RS19520 0.16 -1.8 4,214,072 + RR42_RS19520 0.16 -0.6 4,214,073 - RR42_RS19520 0.16 -0.5 4,214,073 - RR42_RS19520 0.16 -1.7 4,214,173 + RR42_RS19520 0.20 -0.6 4,214,173 + RR42_RS19520 0.20 -1.1 4,214,173 + RR42_RS19520 0.20 -0.7 4,214,173 + RR42_RS19520 0.20 +0.1 4,214,173 + RR42_RS19520 0.20 -0.8 4,214,173 + RR42_RS19520 0.20 -1.1 4,214,173 + RR42_RS19520 0.20 -2.9 4,214,174 - RR42_RS19520 0.20 -3.8 4,214,174 - RR42_RS19520 0.20 -1.3 4,214,174 - RR42_RS19520 0.20 -2.2 4,214,174 - RR42_RS19520 0.20 -2.6 4,214,174 - RR42_RS19520 0.20 -1.4 4,214,275 + RR42_RS19520 0.24 -2.8 4,214,275 + RR42_RS19520 0.24 -1.8 4,214,276 - RR42_RS19520 0.24 -1.8 4,214,276 - RR42_RS19520 0.24 -1.6 4,214,276 - RR42_RS19520 0.24 +0.4 4,214,276 - RR42_RS19520 0.24 -0.8 4,214,572 + RR42_RS19520 0.36 -0.6 4,214,573 - RR42_RS19520 0.36 +0.9 4,214,589 + RR42_RS19520 0.37 -1.4 4,214,589 + RR42_RS19520 0.37 -1.7 4,214,590 - RR42_RS19520 0.37 -1.8 4,214,590 - RR42_RS19520 0.37 +2.2 4,214,590 - RR42_RS19520 0.37 +2.2
Or see this region's nucleotide sequence