Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS16215

Experiment: adipate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS16210 and RR42_RS16215 are separated by 97 nucleotidesRR42_RS16215 and RR42_RS16220 overlap by 4 nucleotidesRR42_RS16220 and RR42_RS16225 are separated by 105 nucleotides RR42_RS16210: RR42_RS16210 - dihydroxy-acid dehydratase, at 3,509,091 to 3,510,764 _RS16210 RR42_RS16215: RR42_RS16215 - hypothetical protein, at 3,510,862 to 3,511,455 _RS16215 RR42_RS16220: RR42_RS16220 - DNA polymerase III subunit chi, at 3,511,452 to 3,511,922 _RS16220 RR42_RS16225: RR42_RS16225 - cytosol aminopeptidase, at 3,512,028 to 3,513,596 _RS16225 Position (kb) 3510 3511 3512Strain fitness (log2 ratio) -1 0 1 2at 3511.137 kb on - strand, within RR42_RS16215at 3511.849 kb on + strand, within RR42_RS16220at 3511.953 kb on - strandat 3512.143 kb on + strandat 3512.143 kb on + strandat 3512.143 kb on + strandat 3512.143 kb on + strandat 3512.155 kb on + strandat 3512.248 kb on + strand, within RR42_RS16225at 3512.249 kb on - strand, within RR42_RS16225at 3512.431 kb on + strand, within RR42_RS16225at 3512.431 kb on + strand, within RR42_RS16225at 3512.432 kb on - strand, within RR42_RS16225at 3512.432 kb on - strand, within RR42_RS16225at 3512.432 kb on - strand, within RR42_RS16225at 3512.432 kb on - strand, within RR42_RS16225

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Per-strain Table

Position Strand Gene LocusTag Fraction adipate (C)
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3,511,137 - RR42_RS16215 0.46 +2.4
3,511,849 + RR42_RS16220 0.84 -1.7
3,511,953 - -0.4
3,512,143 + +0.0
3,512,143 + +1.5
3,512,143 + +0.2
3,512,143 + +2.7
3,512,155 + +1.2
3,512,248 + RR42_RS16225 0.14 +1.5
3,512,249 - RR42_RS16225 0.14 -1.4
3,512,431 + RR42_RS16225 0.26 +0.3
3,512,431 + RR42_RS16225 0.26 -0.5
3,512,432 - RR42_RS16225 0.26 -0.3
3,512,432 - RR42_RS16225 0.26 -0.4
3,512,432 - RR42_RS16225 0.26 +1.0
3,512,432 - RR42_RS16225 0.26 +0.5

Or see this region's nucleotide sequence