Experiment: adipate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS03860 and RR42_RS03865 are separated by 93 nucleotides RR42_RS03865 and RR42_RS03870 are separated by 112 nucleotides RR42_RS03870 and RR42_RS03875 are separated by 166 nucleotides
RR42_RS03860: RR42_RS03860 - transcriptional regulator, at 852,840 to 853,919
_RS03860
RR42_RS03865: RR42_RS03865 - hydroxyacid dehydrogenase, at 854,013 to 854,954
_RS03865
RR42_RS03870: RR42_RS03870 - hypothetical protein, at 855,067 to 855,261
_RS03870
RR42_RS03875: RR42_RS03875 - nucleoside 2-deoxyribosyltransferase, at 855,428 to 855,976
_RS03875
Position (kb) 854
855 Strain fitness (log2 ratio) -1
0
1
2 at 853.068 kb on + strand, within RR42_RS03860 at 853.069 kb on - strand, within RR42_RS03860 at 853.069 kb on - strand, within RR42_RS03860 at 853.076 kb on + strand, within RR42_RS03860 at 853.203 kb on + strand, within RR42_RS03860 at 853.769 kb on + strand, within RR42_RS03860 at 853.769 kb on + strand, within RR42_RS03860 at 853.770 kb on - strand, within RR42_RS03860 at 853.770 kb on - strand, within RR42_RS03860 at 853.770 kb on - strand, within RR42_RS03860 at 853.774 kb on - strand, within RR42_RS03860 at 853.963 kb on + strand at 854.031 kb on - strand at 854.083 kb on - strand at 854.245 kb on - strand, within RR42_RS03865 at 854.245 kb on - strand, within RR42_RS03865 at 854.651 kb on - strand, within RR42_RS03865 at 854.836 kb on + strand, within RR42_RS03865 at 854.836 kb on + strand, within RR42_RS03865 at 854.837 kb on - strand, within RR42_RS03865 at 854.990 kb on + strand at 854.993 kb on - strand at 855.080 kb on - strand at 855.080 kb on - strand at 855.081 kb on + strand at 855.440 kb on + strand at 855.440 kb on + strand at 855.440 kb on + strand at 855.515 kb on + strand, within RR42_RS03875 at 855.516 kb on - strand, within RR42_RS03875
Per-strain Table
Position Strand Gene LocusTag Fraction adipate (C) remove 853,068 + RR42_RS03860 0.21 +0.8 853,069 - RR42_RS03860 0.21 -0.4 853,069 - RR42_RS03860 0.21 +0.8 853,076 + RR42_RS03860 0.22 -0.5 853,203 + RR42_RS03860 0.34 -0.6 853,769 + RR42_RS03860 0.86 +0.3 853,769 + RR42_RS03860 0.86 +0.1 853,770 - RR42_RS03860 0.86 -0.1 853,770 - RR42_RS03860 0.86 -0.6 853,770 - RR42_RS03860 0.86 -1.3 853,774 - RR42_RS03860 0.86 +0.4 853,963 + +0.3 854,031 - -1.7 854,083 - +1.9 854,245 - RR42_RS03865 0.25 +0.1 854,245 - RR42_RS03865 0.25 +0.0 854,651 - RR42_RS03865 0.68 +1.0 854,836 + RR42_RS03865 0.87 -0.1 854,836 + RR42_RS03865 0.87 +0.3 854,837 - RR42_RS03865 0.87 +0.8 854,990 + +1.0 854,993 - +0.1 855,080 - -0.7 855,080 - -0.3 855,081 + +1.3 855,440 + -1.0 855,440 + -0.7 855,440 + +0.9 855,515 + RR42_RS03875 0.16 -1.5 855,516 - RR42_RS03875 0.16 +0.9
Or see this region's nucleotide sequence