Experiment: adipate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS01015 and RR42_RS01020 are separated by 168 nucleotides RR42_RS01020 and RR42_RS01025 overlap by 11 nucleotides RR42_RS01025 and RR42_RS01030 are separated by 253 nucleotides RR42_RS01030 and RR42_RS01035 overlap by 2 nucleotides
RR42_RS01015: RR42_RS01015 - TonB-dependent receptor, at 239,995 to 242,145
_RS01015
RR42_RS01020: RR42_RS01020 - hypothetical protein, at 242,314 to 242,781
_RS01020
RR42_RS01025: RR42_RS01025 - GTPase, at 242,771 to 244,066
_RS01025
RR42_RS01030: RR42_RS01030 - molecular chaperone DnaK, at 244,320 to 244,739
_RS01030
RR42_RS01035: RR42_RS01035 - hypothetical protein, at 244,738 to 245,046
_RS01035
Position (kb) 242
243
244
245 Strain fitness (log2 ratio) -2
-1
0
1 at 241.836 kb on - strand, within RR42_RS01015 at 242.883 kb on + strand at 242.884 kb on - strand at 243.040 kb on + strand, within RR42_RS01025 at 243.040 kb on + strand, within RR42_RS01025 at 243.041 kb on - strand, within RR42_RS01025 at 243.134 kb on + strand, within RR42_RS01025 at 243.289 kb on - strand, within RR42_RS01025 at 243.563 kb on + strand, within RR42_RS01025 at 243.564 kb on - strand, within RR42_RS01025 at 243.564 kb on - strand, within RR42_RS01025 at 243.564 kb on - strand, within RR42_RS01025 at 243.680 kb on - strand, within RR42_RS01025 at 243.786 kb on + strand, within RR42_RS01025 at 243.787 kb on - strand, within RR42_RS01025 at 244.041 kb on - strand at 244.122 kb on + strand at 244.189 kb on + strand at 244.190 kb on - strand at 244.190 kb on - strand at 244.195 kb on + strand at 244.196 kb on - strand at 244.196 kb on - strand at 244.196 kb on - strand at 244.196 kb on - strand at 244.196 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction adipate (C) remove 241,836 - RR42_RS01015 0.86 -0.0 242,883 + +0.3 242,884 - -0.0 243,040 + RR42_RS01025 0.21 -1.3 243,040 + RR42_RS01025 0.21 -2.2 243,041 - RR42_RS01025 0.21 -0.8 243,134 + RR42_RS01025 0.28 +1.5 243,289 - RR42_RS01025 0.40 +0.5 243,563 + RR42_RS01025 0.61 -1.6 243,564 - RR42_RS01025 0.61 +0.2 243,564 - RR42_RS01025 0.61 -0.7 243,564 - RR42_RS01025 0.61 -0.8 243,680 - RR42_RS01025 0.70 +0.1 243,786 + RR42_RS01025 0.78 -2.2 243,787 - RR42_RS01025 0.78 -1.0 244,041 - +0.2 244,122 + -0.3 244,189 + -0.3 244,190 - +0.8 244,190 - +0.3 244,195 + +0.2 244,196 - -0.1 244,196 - -1.9 244,196 - +0.7 244,196 - +0.3 244,196 - +0.5
Or see this region's nucleotide sequence