Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT3163

Experiment: Varel_Bryant_medium_Glucose with Phenazine ethosulfate 0.1 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Varel_Bryant_medium_Glucose with Phenazine ethosulfate 0.1 mM
4,031,278	-				-2.0
4,031,278	-				-1.8
4,031,278	-				-1.6
4,031,286	+				-1.6
4,031,287	-				-1.0
4,031,292	+				+0.0
4,031,293	-				-0.7
4,031,293	-				-2.0
4,031,363	+				-2.3
4,031,386	+				+0.1
4,031,386	+				+0.3
4,031,386	+				-0.4
4,031,386	+				-0.5
4,031,407	+				-1.0
4,031,418	-				+0.0
4,031,432	-		BT3162	0.11	-1.0
4,031,456	-		BT3162	0.14	-0.6
4,031,528	+		BT3162	0.22	+0.7
4,031,529	-		BT3162	0.22	-2.8
4,031,536	+		BT3162	0.23	-0.3
4,031,536	+		BT3162	0.23	-0.4
4,031,545	+		BT3162	0.24	-0.6
4,031,587	+		BT3162	0.28	-0.4
4,031,597	+		BT3162	0.29	-1.4
4,031,601	-		BT3162	0.30	-0.8
4,031,605	+		BT3162	0.30	+2.0
4,031,606	-		BT3162	0.30	+0.1
4,031,615	+		BT3162	0.31	-1.6
4,031,615	+		BT3162	0.31	-1.8
4,031,658	-		BT3162	0.36	+1.0
4,031,703	+		BT3162	0.41	-1.6
4,031,703	+		BT3162	0.41	+1.0
4,031,719	+		BT3162	0.43	-3.4
4,031,760	-		BT3162	0.47	+0.0
4,031,775	+		BT3162	0.49	-0.4
4,031,776	-		BT3162	0.49	-0.1
4,031,794	+		BT3162	0.51	-0.8
4,031,794	+		BT3162	0.51	+0.0
4,031,794	+		BT3162	0.51	-4.6
4,031,794	+		BT3162	0.51	-2.8
4,031,794	+		BT3162	0.51	-2.0
4,031,794	+		BT3162	0.51	-1.6
4,031,796	+		BT3162	0.51	-0.8
4,031,796	+		BT3162	0.51	-1.0
4,031,796	+		BT3162	0.51	-1.0
4,031,796	+		BT3162	0.51	-1.0
4,031,797	-		BT3162	0.51	-2.0
4,031,797	-		BT3162	0.51	-2.3
4,031,801	+		BT3162	0.52	+0.5
4,031,802	-		BT3162	0.52	-1.3
4,031,802	-		BT3162	0.52	+1.0
4,031,804	-		BT3162	0.52	+0.4
4,031,804	-		BT3162	0.52	+0.0
4,031,833	+		BT3162	0.55	+0.0
4,031,855	+		BT3162	0.58	-0.7
4,031,855	+		BT3162	0.58	-1.8
4,031,857	+		BT3162	0.58	+1.4
4,031,857	+		BT3162	0.58	+0.3
4,031,858	-		BT3162	0.58	-0.2
4,031,858	-		BT3162	0.58	-1.7
4,031,902	+		BT3162	0.63	-0.6
4,031,902	+		BT3162	0.63	-1.2
4,031,903	-		BT3162	0.63	-1.0
4,031,905	-		BT3162	0.63	+0.0
4,031,906	+		BT3162	0.63	-4.2
4,031,923	+		BT3162	0.65	+0.0
4,031,923	+		BT3162	0.65	+0.2
4,031,924	-		BT3162	0.65	-1.6
4,031,924	-		BT3162	0.65	-1.6
4,031,959	-		BT3162	0.69	+1.6
4,031,972	-		BT3162	0.71	-0.7
4,031,997	+		BT3162	0.74	-0.8
4,032,066	+		BT3162	0.81	+0.0
4,032,107	+		BT3162	0.86	-2.8
4,032,138	+		BT3162	0.89	-1.0
4,032,138	+		BT3162	0.89	-1.4
4,032,139	-		BT3162	0.89	-2.8
4,032,139	-		BT3162	0.89	-1.6
4,032,144	+		BT3162	0.90	-0.6
4,032,176	-				+1.8
4,032,195	+				-0.6
4,032,195	+				-3.0
4,032,196	-				+2.0
4,032,274	-				-2.2
4,032,274	-				-2.8
4,032,274	-				-0.6
4,032,299	+				-0.5
4,032,349	+				-1.6
4,032,349	+				+1.0
4,032,405	+				-0.5
4,032,406	-				-2.0
4,032,429	+				+0.8
4,032,430	-				-0.5
4,032,432	+				+1.2
4,032,442	-				+1.0
4,032,465	-				-1.3
4,032,503	+		BT3163	0.11	-1.6
4,032,569	+		BT3163	0.15	+0.0
4,032,581	-		BT3163	0.15	+0.0
4,032,592	-		BT3163	0.16	-2.0
4,032,623	+		BT3163	0.17	-1.6
4,032,624	-		BT3163	0.17	+0.0
4,032,624	-		BT3163	0.17	-1.0
4,032,626	+		BT3163	0.17	+0.4
4,032,635	-		BT3163	0.18	+1.6
4,032,736	+		BT3163	0.23	+0.7
4,032,737	-		BT3163	0.23	-0.4
4,032,737	-				-1.0
4,032,737	-		BT3163	0.23	-4.2
4,032,737	-		BT3163	0.23	+2.0
4,032,760	+		BT3163	0.24	+0.0
4,032,761	-		BT3163	0.24	+0.0
4,032,800	+		BT3163	0.26	-0.3
4,032,800	+		BT3163	0.26	-0.4
4,032,814	-		BT3163	0.27	+0.4
4,032,814	-		BT3163	0.27	+0.6
4,032,833	-		BT3163	0.28	+0.5
4,032,833	-		BT3163	0.28	-1.6
4,032,842	-		BT3163	0.28	+0.6
4,032,842	-		BT3163	0.28	+2.0
4,032,865	+		BT3163	0.29	+0.0
4,032,895	+		BT3163	0.31	+0.9
4,032,896	-		BT3163	0.31	+0.3
4,032,896	-		BT3163	0.31	-0.7
4,032,896	-		BT3163	0.31	+0.0
4,032,902	-		BT3163	0.31	-1.0
4,032,918	+		BT3163	0.32	-2.3
4,032,918	+		BT3163	0.32	-1.0
4,032,919	-		BT3163	0.32	+1.0
4,032,929	+		BT3163	0.32	-0.2
4,032,946	+		BT3163	0.33	-2.0
4,032,947	-		BT3163	0.33	-2.3
4,032,964	+		BT3163	0.34	-1.6
4,032,964	+		BT3163	0.34	+0.2
4,032,965	-		BT3163	0.34	-1.3
4,032,965	-		BT3163	0.34	+0.5
4,032,967	-		BT3163	0.34	-0.6
4,032,967	-		BT3163	0.34	-1.5
4,032,967	-		BT3163	0.34	-1.4
4,033,008	+		BT3163	0.36	-0.7
4,033,009	-		BT3163	0.36	+1.8
4,033,013	-		BT3163	0.36	+2.3
4,033,029	-		BT3163	0.37	+1.1
4,033,054	+		BT3163	0.39	-0.6
4,033,054	+		BT3163	0.39	+0.6
4,033,093	+		BT3163	0.40	+0.7
4,033,093	+		BT3163	0.40	+0.7
4,033,327	-		BT3163	0.52	-0.7
4,033,327	-		BT3163	0.52	-0.6
4,033,333	+		BT3163	0.52	-1.0
4,033,334	-		BT3163	0.52	-2.5
4,033,338	-		BT3163	0.53	+0.6
4,033,366	+		BT3163	0.54	-1.4
4,033,367	-		BT3163	0.54	-1.3
4,033,367	-		BT3163	0.54	-0.6
4,033,368	+		BT3163	0.54	-1.0
4,033,369	-		BT3163	0.54	-2.3
4,033,412	+		BT3163	0.56	-1.3
4,033,413	-		BT3163	0.56	-1.3
4,033,465	-		BT3163	0.59	+4.3
4,033,465	-		BT3163	0.59	+1.2
4,033,513	+		BT3163	0.61	-2.0
4,033,513	+		BT3163	0.61	+0.0
4,033,513	+		BT3163	0.61	-0.5
4,033,513	+		BT3163	0.61	-0.7
4,033,514	-		BT3163	0.61	+0.2
4,033,562	+		BT3163	0.64	+0.0
4,033,620	+		BT3163	0.66	+0.9
4,033,671	+		BT3163	0.69	+1.8
4,033,671	+		BT3163	0.69	-0.9
4,033,673	+		BT3163	0.69	-1.3
4,033,677	+		BT3163	0.69	-2.9
4,033,692	-		BT3163	0.70	-1.6
4,033,786	+		BT3163	0.75	-0.6
4,033,840	-		BT3163	0.77	+0.6
4,033,841	+		BT3163	0.77	-1.6
4,033,841	+		BT3163	0.77	+0.5
4,033,841	+		BT3163	0.77	-0.8
4,033,842	-		BT3163	0.77	+0.0
4,033,846	-		BT3163	0.78	+0.1
4,033,848	+		BT3163	0.78	+1.0
4,033,925	+		BT3163	0.82	+1.8
4,033,950	+		BT3163	0.83	+2.0
4,034,035	+		BT3163	0.87	+0.3
4,034,036	-		BT3163	0.87	-0.3
4,034,036	-		BT3163	0.87	+1.0
4,034,036	-		BT3163	0.87	-1.0
4,034,072	-		BT3163	0.89	-1.0
4,034,072	-		BT3163	0.89	-1.3
4,034,072	-		BT3163	0.89	+0.5
4,034,146	+				-0.8
4,034,147	-				-1.6
4,034,157	+				-1.9
4,034,182	+				-0.7
4,034,200	+				-1.6
4,034,201	-				-0.4
4,034,207	+				-2.8
4,034,207	+				-2.3
4,034,207	+				-1.0
4,034,238	-				+1.6
4,034,245	-				+3.8
4,034,246	+				+0.0
4,034,246	+				+0.0
4,034,247	-				-1.6
4,034,247	-				+0.0
4,034,247	-				+0.0
4,034,250	+				-0.6
4,034,251	-				-1.0
4,034,251	-				+0.7
4,034,297	-				-1.1
4,034,318	+				-2.9
4,034,327	+				-3.0
4,034,331	+				+0.0
4,034,331	+				-0.7
4,034,332	-				+1.6
4,034,332	-				+0.0
4,034,371	-				+0.4
4,034,422	-				-1.6
4,034,422	-				-1.0
4,034,426	+				+0.1
4,034,445	+				+0.0
4,034,447	+				-2.5
4,034,447	+				-3.3
4,034,448	-				+0.0
4,034,452	+				-0.6
4,034,452	+				+1.1
4,034,452	+				-1.2
4,034,453	-				-0.7
4,034,496	-				+0.0
4,034,529	+				-3.8
4,034,529	+				-4.7
4,034,530	-				-1.0
4,034,530	-				-3.3
4,034,535	-				-2.0
4,034,566	+		BT3164	0.12	-2.3
4,034,567	-		BT3164	0.12	-4.0
4,034,710	+				-1.0
4,034,710	+		BT3164	0.27	-3.2
4,034,710	+		BT3164	0.27	-1.0
4,034,711	-		BT3164	0.27	-2.8
4,034,711	-		BT3164	0.27	-5.5
4,034,711	-		BT3164	0.27	-3.2
4,034,711	-		BT3164	0.27	-3.3
4,034,715	-		BT3164	0.28	-3.2
4,034,715	-		BT3164	0.28	-3.5
4,034,789	+		BT3164	0.36	-2.8
4,034,906	+		BT3164	0.48	-2.8
4,034,931	-		BT3164	0.51	-3.2
4,034,965	-		BT3164	0.54	-3.7
4,034,965	-		BT3164	0.54	-6.3
4,035,008	+		BT3164	0.59	-3.5
4,035,009	-		BT3164	0.59	-1.0
4,035,064	+		BT3164	0.65	-2.0
4,035,071	+		BT3164	0.66	+0.0
4,035,071	+		BT3164	0.66	-1.6
4,035,210	-		BT3164	0.81	-4.7